RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA489308" and tax_kingdom = "Orthornavirae"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Orthornavirae · 4 ✖

bioproject 1

  • PRJNA489308 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
450225 450225 PRJNA489308_P_NODE_1_length_9248_cov_163.244578_g0_i0 PRJNA489308 1 9248 163.244578 15096.85857344 brine shrimp iflavirus 3 2900464 Viruses Viruses 16859 0   NTclustered gi|2209094758|gb|OL472451.1| 2900464 g0 i0 99.61 10.9972967128028 9238 35 99 1 1 9238 1 9237 MAG: Brine shrimp iflavirus 3 isolate KAZ/15-16 RNA-dependent RNA polymerase gene, complete cds blastn 101703 16859 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Iflaviridae Iflavirus brine shrimp iflavirus 3
3000795 3000795 PRJNA489308_P_NODE_10423_length_351_cov_3.737410_g10347_i0 PRJNA489308 10423 351 3.73741 13.1183091 Fish-associated picorna-like virus 3 3003959 Viruses Viruses 62.1 5.51e-5   NTclustered gi|2214231579|gb|OM622281.1| 3003959 g10347 i0 86.207 0.501424501424501 58 6 16 2 157 213 8912 8856 MAG: Picornavirales sp. isolate HPLV-26 genomic sequence blastn 176 62.1 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales     Fish-associated picorna-like virus 3
9378042 9378042 PRJNA489308_P_NODE_33108_length_248_cov_0.880000_g33032_i0 PRJNA489308 33108 248 0.88 2.1824 Sclerotinia sclerotiorum fusarivirus 2 2822941 Viruses Viruses 422 1.48e-113   NTclustered gi|2029278261|gb|MT646393.1| 2822941 g33032 i0 97.561 2.13306451612903 246 6 99 0 3 248 6179 5934 MAG: Sclerotinia sclerotiorum fusarivirus 2, partial genome blastn 529 422 1 Viruses   Orthornavirae Pisuviricota Duplopiviricetes Durnavirales Fusariviridae   Sclerotinia sclerotiorum fusarivirus 2
23402540 23402540 PRJNA489308_P_NODE_37439_length_242_cov_4.491124_g37363_i0 PRJNA489308 37439 242 4.491124 10.86852008 Sclerotinia sclerotiorum mitovirus 42 2879888 Viruses Viruses 110 1.28e-19   NTclustered gi|2132909481|gb|MW454891.1| 2879888 g37363 i0 93.243 0.305785123966942 74 5 31 0 112 185 3066 3139 Sclerotinia sclerotiorum mitovirus 42 isolate GB&PB-4 RNA-dependent RNA polymerase gene, complete cds blastn 74 110 1 Viruses   Orthornavirae Lenarviricota Howeltoviricetes Cryppavirales Mitoviridae Mitovirus Sclerotinia sclerotiorum mitovirus 42

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;