RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA489308" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 5 ✖

bioproject 1

  • PRJNA489308 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9377915 9377915 PRJNA489308_P_NODE_16248_length_306_cov_0.991416_g16172_i0 PRJNA489308 16248 306 0.991416 3.03373296 Luteolibacter sp. SL250 2995170 Bacteria Bacteria 566 8.239999999999998e-157   NTclustered gi|2381117106|gb|CP113054.1| 2995170 g16172 i0 100 277.408496732026 306 0 100 0 1 306 2335 2030 Luteolibacter sp. SL250 chromosome blastn 84887 566 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. SL250
10654048 10654048 PRJNA489308_P_NODE_8969_length_370_cov_1.555556_g8893_i0 PRJNA489308 8969 370 1.555556 5.7555572 Planctellipticum variicoloris 3064265 Bacteria Bacteria 52.8 0.035   NTclustered gi|2557458921|gb|CP130886.1| 3064265 g8893 i0 100 0.0756756756756757 28 0 8 0 212 239 1058173 1058200 Planctellipticum variicoloris strain SH412 chromosome, complete genome blastn 28 52.8 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Planctellipticum Planctellipticum variicoloris
13203917 13203917 PRJNA489308_P_NODE_33431_length_247_cov_2.850575_g33355_i0 PRJNA489308 33431 247 2.850575 7.04092025 Phycisphaeraceae bacterium 2026777 Bacteria Bacteria 62.1 3.71e-5   NTclustered gi|2258877542|gb|CP060234.1| 2026777 g33355 i0 97.222 1.64372469635628 36 1 15 0 99 134 2220200 2220165 MAG: Phycisphaeraceae bacterium isolate HK-STAS-PLAN-6 chromosome blastn 406 62.1 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales Phycisphaeraceae   Phycisphaeraceae bacterium
22126799 22126799 PRJNA489308_P_NODE_7918_length_389_cov_1.357595_g7842_i0 PRJNA489308 7918 389 1.357595 5.28104455 Luteolibacter sp. SL250 2995170 Bacteria Bacteria 691 0   NTclustered gi|2381117106|gb|CP113054.1| 2995170 g7842 i0 98.715 287.030848329049 389 5 100 0 1 389 1023 635 Luteolibacter sp. SL250 chromosome blastn 111655 691 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. SL250
23402432 23402432 PRJNA489308_P_NODE_21359_length_281_cov_2.403846_g21283_i0 PRJNA489308 21359 281 2.403846 6.75480726 Luteolibacter sp. SL250 2995170 Bacteria Bacteria 497 2.77e-136   NTclustered gi|2381117106|gb|CP113054.1| 2995170 g21283 i0 98.577 275.693950177936 281 4 100 0 1 281 4716431 4716711 Luteolibacter sp. SL250 chromosome blastn 77470 497 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. SL250

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;