RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA489308" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 4 ✖

bioproject 1

  • PRJNA489308 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4926228 4926228 PRJNA489308_P_NODE_25544_length_266_cov_1.523316_g25468_i0 PRJNA489308 25544 266 1.523316 4.05202056 root 1 Root_unresolved Root_unresolved 58.4 5.23e-4   NTclustered gi|923128354|ref|XM_013902190.1| 461836 g25468 i0 100 1.90225563909774 31 0 12 0 90 120 3992 3962 Thecamonas trahens ATCC 50062 5'-3' exoribonuclease (AMSG_05553), partial mRNA blastn 506 58.4 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
10653731 10653731 PRJNA489308_P_NODE_1109_length_858_cov_3.919745_g1048_i0 PRJNA489308 1109 858 3.919745 33.6314121 Thecamonas trahens 529818 Root_unresolved Root_unresolved 315 9.979999999999999e-81   NTclustered gi|923134252|ref|XM_013905138.1| 461836 g1048 i0 77.778 12.6456876456876 549 96 63 17 43 581 465 997 Thecamonas trahens ATCC 50062 adenine nucleotide translocator (AMSG_02751), mRNA blastn 10850 315 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
17027576 17027576 PRJNA489308_P_NODE_4034_length_509_cov_3.699541_g3958_i0 PRJNA489308 4034 509 3.699541 18.83066369 Thecamonas trahens 529818 Root_unresolved Root_unresolved 224 9.969999999999999e-54   NTclustered gi|923125359|ref|XM_013900694.1| 461836 g3958 i0 82.879 38.2161100196464 257 36 50 6 79 331 529 277 Thecamonas trahens ATCC 50062 calmodulin (AMSG_07687), mRNA blastn 19452 224 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
22126820 22126820 PRJNA489308_P_NODE_9678_length_360_cov_4.135889_g9602_i0 PRJNA489308 9678 360 4.135889 14.8892004 Thecamonas trahens 529818 Root_unresolved Root_unresolved 172 2.51e-38   NTclustered gi|923134252|ref|XM_013905138.1| 461836 g9602 i0 81.223 29.4583333333333 229 29 61 10 106 324 198 422 Thecamonas trahens ATCC 50062 adenine nucleotide translocator (AMSG_02751), mRNA blastn 10605 172 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;