RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA488043" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA488043 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5553605 5553605 PRJNA488043_S_NODE_825_length_207_cov_4.174157_g814_i0 PRJNA488043 825 207 4.174157 8.64050499 Pseudogemmatithrix spongiicola 3062599 Bacteria Bacteria 329 7.47e-86   NTclustered gi|2557479348|gb|CP130613.1| 3062599 g814 i0 95.631 64.0579710144928 206 7 99 2 3 207 1553070 1553274 Pseudogemmatithrix spongiicola strain 318 chromosome, complete genome blastn 13260 329 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Pseudogemmatithrix Pseudogemmatithrix spongiicola
8103138 8103138 PRJNA488043_S_NODE_1067_length_185_cov_5.121795_g1056_i0 PRJNA488043 1067 185 5.121795 9.47532075 Pseudogemmatithrix spongiicola 3062599 Bacteria Bacteria 287 3.98e-73   NTclustered gi|2557479348|gb|CP130613.1| 3062599 g1056 i0 97.059 178.216216216216 170 5 92 0 3 172 1553886 1553717 Pseudogemmatithrix spongiicola strain 318 chromosome, complete genome blastn 32970 287 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Pseudogemmatithrix Pseudogemmatithrix spongiicola
9377863 9377863 PRJNA488043_S_NODE_848_length_204_cov_5.708571_g837_i0 PRJNA488043 848 204 5.708571 11.64548484 Pseudogemmatithrix spongiicola 3062599 Bacteria Bacteria 243 9.84e-60   NTclustered gi|2557479348|gb|CP130613.1| 3062599 g837 i0 88.293 571.289215686274 205 21 100 3 1 204 1553068 1552866 Pseudogemmatithrix spongiicola strain 318 chromosome, complete genome blastn 116543 243 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Pseudogemmatithrix Pseudogemmatithrix spongiicola
10653706 10653706 PRJNA488043_S_NODE_1249_length_173_cov_3.354167_g1238_i0 PRJNA488043 1249 173 3.354167 5.80270891 Pseudogemmatithrix spongiicola 3062599 Bacteria Bacteria 279 6.12e-71   NTclustered gi|2557479348|gb|CP130613.1| 3062599 g1238 i0 96.988 41.1849710982659 166 5 96 0 8 173 1555022 1554857 Pseudogemmatithrix spongiicola strain 318 chromosome, complete genome blastn 7125 279 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Pseudogemmatithrix Pseudogemmatithrix spongiicola
13851712 13851712 PRJNA488043_S_NODE_471_length_271_cov_21.933884_g460_i0 PRJNA488043 471 271 21.933884 59.44082564 Pseudomonadati 3379134 Bacteria Bacteria 217 8.329999999999999e-52   NTclustered gi|2893356058|emb|OZ220481.1| 2910168 g460 i0 82.156 130.30258302583 269 33 96 13 11 271 425088 425349 MAG: Longimicrobiales bacterium isolate 6a12c18f-4201-4084-a6a2-16e5aedc472d genome assembly, chromosome: 1 blastn 35312 219 0.990867579908676 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium
14478589 14478589 PRJNA488043_S_NODE_1052_length_186_cov_5.904459_g1041_i0 PRJNA488043 1052 186 5.904459 10.98229374 Pseudogemmatithrix spongiicola 3062599 Bacteria Bacteria 311 2.38e-80   NTclustered gi|2557479348|gb|CP130613.1| 3062599 g1041 i0 96.774 25.0430107526882 186 6 100 0 1 186 1553361 1553546 Pseudogemmatithrix spongiicola strain 318 chromosome, complete genome blastn 4658 311 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Pseudogemmatithrix Pseudogemmatithrix spongiicola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;