contig_metadata
8 rows where analysis = "blastn", bioproject = "PRJNA488043" and tax_phylum = "Campylobacterota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3649059 | 3649059 | PRJNA488043_P_NODE_22363_length_151_cov_3.852459_g20121_i0 | PRJNA488043 | 22363 | 151 | 3.852459 | 5.81721309 | Campylobacter | 194 | Bacteria | Bacteria | 209 | 6.91e-50 | NTclustered | gi|1207769205|gb|MF351718.1| | 199 | g20121 | i0 | 91.358 | 269.788079470199 | 162 | 1 | 99 | 1 | 3 | 151 | 571 | 732 | Campylobacter concisus strain H11O-S1 23S ribosomal RNA gene, partial sequence | blastn | 40738 | 209 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Campylobacteraceae | Campylobacter | Campylobacter concisus | ||
| 4926190 | 4926190 | PRJNA488043_S_NODE_384_length_296_cov_4.655431_g373_i0 | PRJNA488043 | 384 | 296 | 4.655431 | 13.78007576 | Sulfurimonadaceae | 2771471 | Bacteria | Bacteria | 122 | 2.07e-23 | NTclustered | gi|2159817265|gb|CP087998.1| | 2894755 | g373 | i0 | 79.348 | 32.2331081081081 | 184 | 31 | 60 | 6 | 18 | 196 | 1884696 | 1884515 | Sulfurimonas sp. HSL-3221 chromosome, complete genome | blastn | 9541 | 122 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Sulfurimonadaceae | Thiomicrolovo | Thiomicrolovo sulfuroxydans | ||
| 6200988 | 6200988 | PRJNA488043_P_NODE_11965_length_283_cov_4.814961_g9724_i0 | PRJNA488043 | 11965 | 283 | 4.814961 | 13.62633963 | Campylobacter | 194 | Bacteria | Bacteria | 523 | 4.5999999999999983e-144 | NTclustered | gi|930358546|gb|CP012541.1| | 199 | g9724 | i0 | 100 | 235.265017667845 | 283 | 0 | 100 | 0 | 1 | 283 | 1113952 | 1113670 | Campylobacter concisus strain ATCC 33237 chromosome, complete genome | blastn | 66580 | 523 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Campylobacteraceae | Campylobacter | Campylobacter concisus | ||
| 10653443 | 10653443 | PRJNA488043_P_NODE_10909_length_311_cov_4.492908_g8668_i0 | PRJNA488043 | 10909 | 311 | 4.492908 | 13.97294388 | Campylobacter showae | 204 | Bacteria | Bacteria | 575 | 1.3899999999999995e-159 | NTclustered | gi|1483583529|emb|LT631453.1| | 204 | g8668 | i0 | 100 | 235.263665594855 | 311 | 0 | 100 | 0 | 1 | 311 | 389474 | 389784 | Campylobacter showae strain B91_SCBr genome assembly, chromosome: I | blastn | 73167 | 575 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Campylobacteraceae | Campylobacter | Campylobacter showae | ||
| 11301165 | 11301165 | PRJNA488043_P_NODE_19629_length_175_cov_3.602740_g17387_i0 | PRJNA488043 | 19629 | 175 | 3.60274 | 6.304795 | Campylobacter | 194 | Bacteria | Bacteria | 315 | 1.7000000000000002e-81 | NTclustered | gi|1938730527|gb|CP049274.1| | 199 | g17387 | i0 | 99.422 | 245.011428571429 | 173 | 1 | 99 | 0 | 3 | 175 | 1135849 | 1135677 | Campylobacter concisus strain P10CDO-S2 chromosome, complete genome | blastn | 42877 | 315 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Campylobacteraceae | Campylobacter | Campylobacter concisus | ||
| 12576794 | 12576794 | PRJNA488043_P_NODE_10910_length_311_cov_4.432624_g8669_i0 | PRJNA488043 | 10910 | 311 | 4.432624 | 13.78546064 | Campylobacter | 194 | Bacteria | Bacteria | 569 | 6.489999999999998e-158 | NTclustered | gi|930358546|gb|CP012541.1| | 199 | g8669 | i0 | 99.678 | 235.845659163987 | 311 | 1 | 100 | 0 | 1 | 311 | 1113670 | 1113980 | Campylobacter concisus strain ATCC 33237 chromosome, complete genome | blastn | 73348 | 569 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Campylobacteraceae | Campylobacter | Campylobacter concisus | ||
| 12577025 | 12577025 | PRJNA488043_P_NODE_8930_length_376_cov_4.092219_g6710_i0 | PRJNA488043 | 8930 | 376 | 4.092219 | 15.38674344 | Campylobacter | 194 | Bacteria | Bacteria | 608 | 1.689999999999999e-169 | NTclustered | gi|930358546|gb|CP012541.1| | 199 | g6710 | i0 | 94.778 | 226.311170212766 | 383 | 13 | 100 | 1 | 1 | 376 | 1113670 | 1114052 | Campylobacter concisus strain ATCC 33237 chromosome, complete genome | blastn | 85093 | 608 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Campylobacteraceae | Campylobacter | Campylobacter concisus | ||
| 20851665 | 20851665 | PRJNA488043_S_NODE_1357_length_165_cov_9.551471_g1346_i0 | PRJNA488043 | 1357 | 165 | 9.551471 | 15.75992715 | Campylobacter hepaticus | 1813019 | Bacteria | Bacteria | 100 | 4.86e-17 | NTclustered | gi|1940031893|gb|CP065357.1| | 1813019 | g1346 | i0 | 85.714 | 152.048484848485 | 98 | 11 | 59 | 3 | 1 | 97 | 21396 | 21491 | Campylobacter hepaticus strain UF2019SK1 chromosome, complete genome | blastn | 25088 | 100 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Campylobacteraceae | Campylobacter | Campylobacter hepaticus |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;