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contig_metadata

14 rows where analysis = "blastn", bioproject = "PRJNA488043" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 14 ✖

bioproject 1

  • PRJNA488043 · 14 ✖

analysis 1

  • blastn · 14 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1097934 1097934 PRJNA488043_P_NODE_20121_length_170_cov_3.425532_g17879_i0 PRJNA488043 20121 170 3.425532 5.8234044 Chloroidium 1034479 Plants Plants 315 1.64e-81   NTclustered gi|1802907788|gb|MT006209.1| 2704674 g17879 i0 100 88.8647058823529 170 0 100 0 1 170 4298 4467 Chloroidium sp. FACHB-2420 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 15107 315 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium sp. FACHB-2420
1724556 1724556 PRJNA488043_P_NODE_16102_length_213_cov_1.750000_g13860_i0 PRJNA488043 16102 213 1.75 3.7275 Dicloster acuatus 91190 Plants Plants 283 6.109999999999999e-72   NTclustered gi|725651324|ref|NC_025546.1| 91190 g13860 i0 90.61 135.389671361502 213 20 100 0 1 213 131666 131878 Dicloster acuatus culture-collection SAG:41.98 chloroplast, complete genome blastn 28838 283 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Dicloster Dicloster acuatus
2373365 2373365 PRJNA488043_P_NODE_15162_length_225_cov_5.780612_g12920_i0 PRJNA488043 15162 225 5.780612 13.006377 Chlorellaceae 35461 Plants Plants 379 8.079999999999999e-101   NTclustered gi|254798615|ref|NC_012978.1| 3074 g12920 i0 97.309 170.031111111111 223 6 99 0 3 225 91885 92107 Parachlorella kessleri chloroplast, complete genome blastn 38257 379 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Parachlorella Parachlorella kessleri
3000525 3000525 PRJNA488043_P_NODE_10303_length_330_cov_2.956811_g8062_i0 PRJNA488043 10303 330 2.956811 9.7574763 Chloroidium ellipsoideum 63676 Plants Plants 285 2.8099999999999996e-72   NTclustered gi|1169296931|gb|KY364701.1| 63676 g8062 i0 83.819 10.9121212121212 309 41 92 8 1 305 5444 5747 Chloroidium ellipsoideum 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 3601 285 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium ellipsoideum
3649000 3649000 PRJNA488043_P_NODE_16043_length_213_cov_4.021739_g13801_i0 PRJNA488043 16043 213 4.021739 8.56630407 Dictyosphaerium 247496 Plants Plants 344 2.76e-90   NTclustered gi|1231294796|gb|MF664509.1| 2026435 g13801 i0 95.775 99.4460093896714 213 9 100 0 1 213 2984 2772 Dictyosphaerium sp. WfA2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 21182 344 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Dictyosphaerium Dictyosphaerium sp. WfA2
6201095 6201095 PRJNA488043_P_NODE_2745_length_905_cov_23.372146_g1385_i0 PRJNA488043 2745 905 23.372146 211.5179213 Chlorellaceae 35461 Plants Plants 913 0   NTclustered gi|254798615|ref|NC_012978.1| 3074 g1385 i0 91.395 169.270718232044 674 47 74 10 1 668 93872 93204 Parachlorella kessleri chloroplast, complete genome blastn 153190 922 0.990238611713666 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Parachlorella Parachlorella kessleri
7475884 7475884 PRJNA488043_P_NODE_15946_length_214_cov_5.135135_g13704_i0 PRJNA488043 15946 214 5.135135 10.9891889 Chloroidium 1034479 Plants Plants 198 2.29e-46   NTclustered gi|1021681228|gb|KX024689.1| 3082 g13704 i0 100 50.1822429906542 107 0 76 0 108 214 2885 2991 Chloroidium saccharophilum strain FACHB-1796 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 10739 198 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium saccharophilum
11301176 11301176 PRJNA488043_P_NODE_20829_length_164_cov_1.785185_g18587_i0 PRJNA488043 20829 164 1.785185 2.9277034 root 1 Root_unresolved Root_unresolved 58.4 2.94e-4   NTclustered gi|1388162558|gb|MF276981.1| 3105 g18587 i0 97.143 5.84146341463415 35 0 21 1 15 48 181030 181064 Pediastrum duplex chloroplast, complete genome blastn 958 58.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Hydrodictyaceae Pediastrum Pediastrum duplex
11301252 11301252 PRJNA488043_P_NODE_5809_length_537_cov_12.905512_g3819_i0 PRJNA488043 5809 537 12.905512 69.30259944 Chlorellaceae 35461 Plants Plants 878 0   NTclustered gi|254798615|ref|NC_012978.1| 3074 g3819 i0 96.442 134.929236499069 534 16 99 3 6 537 92975 92443 Parachlorella kessleri chloroplast, complete genome blastn 72457 883 0.994337485843715 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Parachlorella Parachlorella kessleri
15125917 15125917 PRJNA488043_P_NODE_20292_length_169_cov_1.607143_g18050_i0 PRJNA488043 20292 169 1.607143 2.71607167 Coccomyxa 41891 Plants Plants 69.4 1.4e-7   NTclustered gi|2106301899|dbj|AP025007.1| 2315456 g18050 i0 80.682 1.0414201183432 88 17 52 0 2 89 47434 47521 Coccomyxa sp. Obi mitochondrial DNA, complete genome blastn 176 69.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa sp. Obi
15752556 15752556 PRJNA488043_P_NODE_20133_length_170_cov_2.822695_g17891_i0 PRJNA488043 20133 170 2.822695 4.7985815 Chloroidium sp. KL-2023a 3031248 Plants Plants 143 8.2e-30   NTclustered gi|2450595352|gb|ON986219.1| 3031248 g17891 i0 85.401 7.36470588235294 137 20 81 0 5 141 222269 222133 Chloroidium sp. KL-2023a clone 2023 chloroplast, complete genome blastn 1252 143 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium sp. KL-2023a
16400617 16400617 PRJNA488043_S_NODE_1653_length_150_cov_4.652893_g1642_i0 PRJNA488043 1653 150 4.652893 6.9793395 Prototheca 3110 Plants Plants 78.7 2.02e-10   NTclustered gi|1381389463|ref|NC_037449.1| 1973153 g1642 i0 86.301 1.43333333333333 73 8 48 2 1 72 5638 5567 Prototheca zopfii strain SAG 2063 mitochondrion, complete genome blastn 215 78.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca ciferrii
17675697 17675697 PRJNA488043_P_NODE_8734_length_383_cov_32.192090_g6517_i0 PRJNA488043 8734 383 32.19209 123.2957047 Chloroidium 1034479 Plants Plants 248 4.34e-61   NTclustered gi|1802907788|gb|MT006209.1| 2704674 g6517 i0 91.209 48.621409921671 182 16 48 0 1 182 4405 4224 Chloroidium sp. FACHB-2420 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 18622 248 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium sp. FACHB-2420
23402089 23402089 PRJNA488043_P_NODE_13759_length_247_cov_6.518349_g11517_i0 PRJNA488043 13759 247 6.518349 16.10032203 Parachlorella kessleri 3074 Plants Plants 355 1.52e-93   NTclustered gi|254798615|ref|NC_012978.1| 3074 g11517 i0 93.033 104.623481781377 244 16 100 1 1 244 94587 94829 Parachlorella kessleri chloroplast, complete genome blastn 25842 355 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Parachlorella Parachlorella kessleri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;