RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA488043" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 7 ✖

bioproject 1

  • PRJNA488043 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
449904 449904 PRJNA488043_P_NODE_14741_length_231_cov_2.861386_g12499_i0 PRJNA488043 14741 231 2.861386 6.60980166 uncultured Soliformovum 2510342 Evosea other_Eukaryota 366 6.49e-97   NTclustered gi|1564356923|gb|MK443523.1| 2510342 g12499 i0 95.238 2.54545454545455 231 11 100 0 1 231 182 412 Uncultured Soliformovum clone OTUA345 small subunit ribosomal RNA gene, partial sequence; mitochondrial blastn 588 366 1 Eukaryota Amoebozoa   Evosea Variosea Protosteliida Protosteliaceae   uncultured Soliformovum
3000554 3000554 PRJNA488043_P_NODE_12443_length_273_cov_2.897541_g10202_i0 PRJNA488043 12443 273 2.897541 7.91028693 Vannella septentrionalis 197531 Discosea other_Eukaryota 460 3.5099999999999996e-125   NTclustered gi|300078499|gb|GU001161.1| 197531 g10202 i0 97.07 1 273 8 100 0 1 273 1267 1539 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 273 460 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
4925997 4925997 PRJNA488043_P_NODE_15724_length_217_cov_3.186170_g13482_i0 PRJNA488043 15724 217 3.18617 6.9139889 Vannella 95228 Discosea other_Eukaryota 305 1.33e-78   NTclustered gi|270381377|emb|FN598227.1| 544561 g13482 i0 98.276 77 174 3 80 0 1 174 996 823 Uncultured Vannellidae partial 18S rRNA gene, clone BIO1_A11 blastn 16709 305 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae   uncultured Vannellidae
13851596 13851596 PRJNA488043_P_NODE_21951_length_154_cov_144.496000_g19709_i0 PRJNA488043 21951 154 144.496 222.52384 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 279 5.33e-71   NTclustered gi|62865955|gb|AY929930.1| 325074 g19709 i0 100 98.2987012987013 151 0 98 0 2 152 342 192 Vannella sp. strain 4354/I internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence blastn 15138 279 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. strain 4354/I
15752472 15752472 PRJNA488043_P_NODE_13813_length_246_cov_4.525346_g11571_i0 PRJNA488043 13813 246 4.525346 11.13235116 Vannella septentrionalis 197531 Discosea other_Eukaryota 224 4.45e-54   NTclustered gi|300078499|gb|GU001161.1| 197531 g11571 i0 94.928 1.21138211382114 138 7 82 0 35 172 4355 4218 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 298 224 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
19575805 19575805 PRJNA488043_P_NODE_9836_length_345_cov_4.645570_g7597_i0 PRJNA488043 9836 345 4.64557 16.0272165 Vannella septentrionalis 197531 Discosea other_Eukaryota 244 5.019999999999999e-60   NTclustered gi|300078499|gb|GU001161.1| 197531 g7597 i0 88.152 22.0057971014493 211 18 87 5 9 214 2566 2774 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 7592 244 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
20851660 20851660 PRJNA488043_S_NODE_1017_length_189_cov_2.893750_g1006_i0 PRJNA488043 1017 189 2.89375 5.4691875 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 276 8.84e-70   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g1006 i0 93.085 29.3544973544974 188 13 99 0 2 189 2729 2542 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 5548 276 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;