RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA485080" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA485080 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1723982 1723982 PRJNA485080_P_NODE_37982_length_243_cov_1.382353_g37888_i0 PRJNA485080 37982 243 1.382353 3.35911779 Archangium gephyra 48 Bacteria Bacteria 305 1.52e-78   NTclustered gi|827418478|gb|CP011509.1| 48 g37888 i0 89.3 2.00411522633745 243 26 100 0 1 243 8431804 8431562 Archangium gephyra strain DSM 2261, complete genome blastn 487 305 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium gephyra
1724112 1724112 PRJNA485080_P_NODE_8002_length_360_cov_1.404181_g7908_i0 PRJNA485080 8002 360 1.404181 5.0550516 Pendulispora rubella 2741070 Bacteria Bacteria 496 1.31e-135   NTclustered gi|2698045512|gb|CP089929.1| 2741070 g7908 i0 91.69 155.525 361 25 100 3 1 360 7289535 7289179 Pendulispora rubella strain MSr11368 chromosome, complete genome blastn 55989 496 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora rubella
8102111 8102111 PRJNA485080_P_NODE_20047_length_259_cov_2.483871_g19953_i0 PRJNA485080 20047 259 2.483871 6.43322589 Labilithrix luteola 1391654 Bacteria Bacteria 342 1.25e-89   NTclustered gi|913610804|gb|CP012333.1| 1391654 g19953 i0 90.769 163.783783783784 260 18 99 5 3 259 3941985 3942241 Labilithrix luteola strain DSM 27648, complete genome blastn 42420 342 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
11300638 11300638 PRJNA485080_P_NODE_21269_length_251_cov_1.808989_g21175_i0 PRJNA485080 21269 251 1.808989 4.54056239 Pendulispora 3375062 Bacteria Bacteria 433 6.95e-117   NTclustered gi|2698045512|gb|CP089929.1| 2741070 g21175 i0 97.992 272.05577689243 249 5 99 0 3 251 7287167 7287415 Pendulispora rubella strain MSr11368 chromosome, complete genome blastn 68286 433 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora rubella

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;