RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA485080" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 2 ✖

bioproject 1

  • PRJNA485080 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11927648 11927648 PRJNA485080_P_NODE_15650_length_288_cov_1.395349_g15556_i0 PRJNA485080 15650 288 1.395349 4.01860512 Thermus brockianus 56956 Bacteria Bacteria 383 8.32e-102   NTclustered gi|1102955210|gb|CP016312.1| 56956 g15556 i0 90.625 8.63194444444444 288 27 100 0 1 288 395459 395746 Thermus brockianus strain GE-1 chromosome, complete genome blastn 2486 383 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus brockianus
23401260 23401260 PRJNA485080_P_NODE_16739_length_281_cov_1.187500_g16645_i0 PRJNA485080 16739 281 1.1875 3.336875 Deinococcus ficus 317577 Bacteria Bacteria 475 1.2999999999999999e-129   NTclustered gi|1220362168|gb|CP021081.1| 317577 g16645 i0 97.153 1.35231316725979 281 8 100 0 1 281 665425 665145 Deinococcus ficus strain CC-FR2-10, complete genome blastn 380 475 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus ficus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;