RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA485080" and tax_clade = "Sar"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

bioproject 1

  • PRJNA485080 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10653125 10653125 PRJNA485080_P_NODE_8609_length_351_cov_2.737410_g8515_i0 PRJNA485080 8609 351 2.73741 9.6083091 Amphifilidae sp. H-1 1407012 SAR_Eukaryotes SAR_Eukaryotes 649 0   NTclustered gi|550533551|dbj|AB856528.1| 1407012 g8515 i0 100 85.965811965812 351 0 100 0 1 351 1060 710 Amphifilidae sp. H-1 gene for 18S ribosomal RNA, partial sequence blastn 30174 649 1 Eukaryota Sar     Bigyra Amphifilida Amphifilaceae   Amphifilidae sp. H-1
15751790 15751790 PRJNA485080_P_NODE_2473_length_580_cov_2.341223_g2380_i0 PRJNA485080 2473 580 2.341223 13.5790934 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 484 4.769999999999999e-132   NTclustered gi|166041965|emb|CU361047.1| 100861 g2380 i0 82.149 90.5068965517241 577 92 99 9 4 575 652 82 Aphanomyces euteiches cDNA blastn 52494 484 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
19574781 19574781 PRJNA485080_P_NODE_16156_length_285_cov_1.089623_g16062_i0 PRJNA485080 16156 285 1.089623 3.10542555 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 207 5.31e-49   NTclustered gi|813114452|ref|XM_012339991.1| 695850 g16062 i0 80 16.4982456140351 285 53 99 4 3 285 135 417 Saprolegnia parasitica CBS 223.65 hypothetical protein mRNA blastn 4702 207 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;