RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA485080" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA485080 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
448954 448954 PRJNA485080_P_NODE_10301_length_332_cov_1.694981_g10207_i0 PRJNA485080 10301 332 1.694981 5.62733692 Cavenderia fasciculata 261658 Evosea other_Eukaryota 219 2.91e-52   NTclustered gi|470265381|ref|XM_004361428.1| 261658 g10207 i0 81.413 72.6114457831325 269 48 81 2 9 276 344 77 Cavenderia fasciculata heat shock protein (hspB), partial mRNA blastn 24107 219 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
14477591 14477591 PRJNA485080_P_NODE_16872_length_280_cov_1.478261_g16778_i0 PRJNA485080 16872 280 1.478261 4.1391308 Heterostelium album 2086695 Evosea other_Eukaryota 243 1.4300000000000001e-59   NTclustered gi|1160574132|ref|XM_020577244.1| 670386 g16778 i0 83.984 92.3107142857143 256 38 91 3 1 255 552 805 Polysphondylium pallidum PN500 actin (act10), partial mRNA blastn 25847 243 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;