RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA484127" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA484127 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8101500 8101500 PRJNA484127_P_NODE_19707_length_296_cov_4.044843_g19558_i0 PRJNA484127 19707 296 4.044843 11.97273528 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 503 6.309999999999998e-138   NTclustered gi|56757963|gb|AY815390.1| 6182 g19558 i0 97.02 126.226351351351 302 3 100 2 1 296 1303 1604 Schistosoma japonicum SJCHGC01951 protein mRNA, complete cds blastn 37363 503 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
14476883 14476883 PRJNA484127_P_NODE_13712_length_339_cov_1.466165_g13563_i0 PRJNA484127 13712 339 1.466165 4.97029935 Schistosoma mansoni 6183 Platyhelminthes Platyhelminthes 230 1.3799999999999996e-55   NTclustered gi|1369885|gb|L78441.1|SCM14332R 6183 g13563 i0 85.981 5.54867256637168 214 30 63 0 126 339 1 214 Schistosoma mansoni 14-3-3-2 mRNA, 3' end of cds blastn 1881 230 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma mansoni
17026015 17026015 PRJNA484127_P_NODE_39554_length_237_cov_2.323171_g39405_i0 PRJNA484127 39554 237 2.323171 5.50591527 Schistosoma mansoni 6183 Platyhelminthes Platyhelminthes 209 1.19e-49   NTclustered gi|1084307901|ref|XM_018791342.1| 6183 g39405 i0 88.439 33.4556962025316 173 20 73 0 65 237 30 202 Schistosoma mansoni tubulin beta chain,putative partial mRNA blastn 7929 209 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma mansoni

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;