RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA484127" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA484127 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19574269 19574269 PRJNA484127_P_NODE_24256_length_274_cov_1.044776_g24107_i0 PRJNA484127 24256 274 1.044776 2.86268624 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.025   NTclustered gi|698803785|ref|XM_009836620.1| 112090 g24107 i0 96.774 0.113138686131387 31 1 11 0 242 272 963 993 Aphanomyces astaci hypothetical protein mRNA blastn 31 52.8 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
25323599 25323599 PRJNA484127_P_NODE_9640_length_388_cov_2.161905_g9491_i0 PRJNA484127 9640 388 2.161905 8.3881914 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 178 5.86e-40   NTclustered gi|2795037459|ref|XM_067927134.1| 4785 g9491 i0 77.931 59.4046391752577 290 60 74 4 49 336 321 34 Phytophthora cinnamomi 60S ribosomal protein L22 (IUM83_03150), partial mRNA blastn 23049 178 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;