RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA484127" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA484127 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
448579 448579 PRJNA484127_P_NODE_27841_length_259_cov_1.795699_g27692_i0 PRJNA484127 27841 259 1.795699 4.65086041 Mizuhopecten yessoensis 6573 Mollusca Mollusca 182 2.88e-41   NTclustered gi|1207937899|ref|XM_021502813.1| 6573 g27692 i0 88.158 21.7490347490347 152 18 59 0 6 157 170 19 PREDICTED: Mizuhopecten yessoensis 60S ribosomal protein L27a-like (LOC110453724), mRNA blastn 5633 182 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Mizuhopecten Mizuhopecten yessoensis
448846 448846 PRJNA484127_P_NODE_6921_length_443_cov_2.367568_g6773_i0 PRJNA484127 6921 443 2.367568 10.48832624 Mollusca environmental sample 653389 Mollusca Mollusca 329 1.77e-85   NTclustered gi|156254524|gb|EF528299.1| 653389 g6773 i0 81.348 55.6455981941309 445 48 100 20 1 443 998 587 Uncultured mollusc isolate XenLSU7 28S ribosomal RNA gene, partial sequence blastn 24651 329 1 Eukaryota Opisthokonta Metazoa Mollusca         Mollusca environmental sample
1723286 1723286 PRJNA484127_P_NODE_28962_length_255_cov_1.714286_g28813_i0 PRJNA484127 28962 255 1.714286 4.3714293 Cistopus taiwanicus 995026 Mollusca Mollusca 193 1.31e-44   NTclustered gi|570700618|ref|NC_023257.1| 995026 g28813 i0 81.702 91.9019607843137 235 39 91 4 23 255 3201 3433 Cistopus taiwanicus mitochondrion, complete genome blastn 23435 193 1 Eukaryota Opisthokonta Metazoa Mollusca Cephalopoda Octopoda Octopodidae Cistopus Cistopus taiwanicus
8101400 8101400 PRJNA484127_P_NODE_14167_length_335_cov_1.347328_g14018_i0 PRJNA484127 14167 335 1.347328 4.5135488 Bradybaena similaris 145626 Mollusca Mollusca 58.4 6.79e-4   NTclustered gi|2912988862|dbj|AP039593.1| 145626 g14018 i0 100 0.370149253731343 31 0 9 0 149 179 4320819 4320849 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 12, sequence blastn 124 58.4 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
14477183 14477183 PRJNA484127_P_NODE_30372_length_252_cov_0.871508_g30223_i0 PRJNA484127 30372 252 0.871508 2.19620016 Haliotis rubra 36100 Mollusca Mollusca 161 3.639999999999999e-35   NTclustered gi|2194112554|ref|XM_046712337.1| 36100 g30223 i0 88.148 47.3928571428571 135 16 54 0 118 252 1518 1384 PREDICTED: Haliotis rubra tubulin alpha-1A chain-like (LOC124276689), mRNA blastn 11943 161 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Lepetellida Haliotidae Haliotis Haliotis rubra
17674911 17674911 PRJNA484127_P_NODE_22954_length_279_cov_2.252427_g22805_i0 PRJNA484127 22954 279 2.252427 6.28427133 Metazoa 33208 Mollusca Mollusca 516 7.58e-142   NTclustered gi|1928112766|gb|MT947789.1| 6523 g22805 i0 100 98.0824372759857 279 0 100 0 1 279 290 12 Lymnaea stagnalis isolate Lsta_466444 hypothetical protein mRNA, complete cds blastn 27365 516 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Lymnaeidae Lymnaea Lymnaea stagnalis
22125269 22125269 PRJNA484127_P_NODE_5178_length_501_cov_2.343458_g5030_i0 PRJNA484127 5178 501 2.343458 11.74072458 Littorina saxatilis 31220 Mollusca Mollusca 283 1.59e-71   NTclustered gi|2868640102|ref|XM_070351628.1| 31220 g5030 i0 79.31 11.7125748502994 406 82 81 2 5 409 1242 838 PREDICTED: Littorina saxatilis AP-2 complex subunit mu (LOC138978841), transcript variant X1, mRNA blastn 5868 283 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Littorinimorpha Littorinidae Littorina Littorina saxatilis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;