RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA484127" and tax_phylum = "Microsporidia"

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tax_superkingdom 1

tax_phylum 1

  • Microsporidia · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA484127 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2999218 2999218 PRJNA484127_P_NODE_23363_length_277_cov_12.735294_g23214_i0 PRJNA484127 23363 277 12.735294 35.27676438 Vittaforma corneae 42399 Fungi Fungi 171 6.74e-38   NTclustered gi|667639983|ref|XR_552275.1| 993615 g23214 i0 83.871 38.841155234657 186 22 66 6 1 183 2181 2361 Vittaforma corneae ATCC 50505 28S ribosomal RNA (VICG_02297), rRNA blastn 10759 171 1 Eukaryota Opisthokonta Fungi Microsporidia     Nosematidae Vittaforma Vittaforma corneae
9376072 9376072 PRJNA484127_P_NODE_1108_length_983_cov_5.998901_g1000_i0 PRJNA484127 1108 983 5.998901 58.96919683 Ecytonucleospora hepatopenaei 646526 Fungi Fungi 1216 0   NTclustered gi|2522768008|gb|OR162445.1| 646526 g1000 i0 89.239 88.1515768056968 985 89 99 13 10 983 1273 295 Enterocytozoon hepatopenaei strain SHFX2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 86653 1216 1 Eukaryota Opisthokonta Fungi Microsporidia     Enterocytozoonidae Ecytonucleospora Ecytonucleospora hepatopenaei
10652053 10652053 PRJNA484127_P_NODE_15449_length_324_cov_8.095618_g15300_i0 PRJNA484127 15449 324 8.095618 26.22980232 Ecytonucleospora hepatopenaei 646526 Fungi Fungi 529 1.1499999999999999e-145   NTclustered gi|2522768008|gb|OR162445.1| 646526 g15300 i0 96.037 32.3333333333333 328 8 100 3 1 324 3660 3986 Enterocytozoon hepatopenaei strain SHFX2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 10476 529 1 Eukaryota Opisthokonta Fungi Microsporidia     Enterocytozoonidae Ecytonucleospora Ecytonucleospora hepatopenaei
13202119 13202119 PRJNA484127_P_NODE_24511_length_272_cov_5.829146_g24362_i0 PRJNA484127 24511 272 5.829146 15.85527712 Ecytonucleospora nucleophila 1295219 Fungi Fungi 396 1e-105   NTclustered gi|529283990|gb|KF135643.1| 1295219 g24362 i0 92.989 91.7132352941177 271 19 99 0 1 271 26 296 Enterospora nucleophila isolate ENTA2 small subunit ribosomal RNA gene, partial sequence blastn 24946 396 1 Eukaryota Opisthokonta Fungi Microsporidia     Enterocytozoonidae Ecytonucleospora Ecytonucleospora nucleophila
18300116 18300116 PRJNA484127_P_NODE_275_length_1627_cov_23.583655_g229_i0 PRJNA484127 275 1627 23.583655 383.70606685 Ecytonucleospora hepatopenaei 646526 Fungi Fungi 721 0   NTclustered gi|2522768008|gb|OR162445.1| 646526 g229 i0 84.924 12.0688383527966 723 97 93 12 1 716 1751 2468 Enterocytozoon hepatopenaei strain SHFX2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 19636 721 1 Eukaryota Opisthokonta Fungi Microsporidia     Enterocytozoonidae Ecytonucleospora Ecytonucleospora hepatopenaei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;