RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA484127" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA484127 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5551902 5551902 PRJNA484127_P_NODE_12045_length_356_cov_2.123675_g11896_i0 PRJNA484127 12045 356 2.123675 7.560283 Asterias rubens 7604 Echinodermata other_Eukaryota 241 6.7e-59   NTclustered gi|1834282072|ref|XM_033782857.1| 7604 g11896 i0 79.586 79.0112359550562 338 67 95 2 12 348 447 111 PREDICTED: Asterias rubens 60S ribosomal protein L12-like (LOC117299337), mRNA blastn 28128 241 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Forcipulatida Asteriidae Asterias Asterias rubens
17674913 17674913 PRJNA484127_P_NODE_23414_length_277_cov_2.264706_g23265_i0 PRJNA484127 23414 277 2.264706 6.27323562 Metazoa 33208 Echinodermata other_Eukaryota 230 1.1e-55   NTclustered gi|1944861957|ref|XM_038196751.1| 46514 g23265 i0 81.979 44.3032490974729 283 39 100 11 1 277 1066 790 PREDICTED: Patiria miniata 26S proteasome regulatory subunit 6A-B (LOC119725354), mRNA blastn 12272 230 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria miniata
19574440 19574440 PRJNA484127_P_NODE_33956_length_248_cov_0.891429_g33807_i0 PRJNA484127 33956 248 0.891429 2.21074392 Diadema antillarum 105358 Echinodermata other_Eukaryota 239 1.6e-58   NTclustered gi|2919554341|ref|XM_071623304.1| 105358 g33807 i0 85.106 13.3629032258065 235 33 94 2 8 241 2337 2570 PREDICTED: Diadema antillarum clathrin heavy chain 1-like (LOC139711421), mRNA blastn 3314 239 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Diadematoida Diadematidae Diadema Diadema antillarum
24674490 24674490 PRJNA484127_P_NODE_19760_length_296_cov_1.784753_g19611_i0 PRJNA484127 19760 296 1.784753 5.28286888 Asterias rubens 7604 Echinodermata other_Eukaryota 252 2.52e-62   NTclustered gi|1834264758|ref|XM_033771346.1| 7604 g19611 i0 83.582 81.679054054054 268 44 91 0 2 269 1182 915 PREDICTED: Asterias rubens calcium-transporting ATPase sarcoplasmic/endoplasmic reticulum type-like (LOC117290094), transcript variant X2, mRNA blastn 24177 252 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Forcipulatida Asteriidae Asterias Asterias rubens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;