RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA484127" and tax_phylum = "Cnidaria"

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tax_superkingdom 1

tax_phylum 1

  • Cnidaria · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA484127 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5552209 5552209 PRJNA484127_P_NODE_30085_length_252_cov_2.988827_g29936_i0 PRJNA484127 30085 252 2.988827 7.53184404 Hydra vulgaris 6087 Cnidaria other_Eukaryota 54.7 0.006   NTclustered gi|2744889029|ref|XM_065810454.1| 6087 g29936 i0 100 0.23015873015873 29 0 12 0 24 52 2276 2248 PREDICTED: Hydra vulgaris kinesin-like protein KIF28P (LOC100208423), transcript variant X3, mRNA blastn 58 54.7 1 Eukaryota Opisthokonta Metazoa Cnidaria Hydrozoa Anthoathecata Hydridae Hydra Hydra vulgaris
9376183 9376183 PRJNA484127_P_NODE_18288_length_305_cov_1.344828_g18139_i0 PRJNA484127 18288 305 1.344828 4.1017254 Clytia hemisphaerica 252671 Cnidaria other_Eukaryota 267 9.33e-67   NTclustered gi|2782844603|ref|XM_067056021.1| 252671 g18139 i0 89.202 69.7344262295082 213 23 70 0 91 303 1403 1191 PREDICTED: Clytia hemisphaerica tubulin beta-4B chain (LOC136799316), mRNA blastn 21269 267 1 Eukaryota Opisthokonta Metazoa Cnidaria Hydrozoa Leptothecata Clytiidae Clytia Clytia hemisphaerica
20850326 20850326 PRJNA484127_P_NODE_39477_length_238_cov_2.369697_g39328_i0 PRJNA484127 39477 238 2.369697 5.63987886 Xenia sp. Carnegie-2017 2897299 Cnidaria other_Eukaryota 67.6 7.63e-7   NTclustered gi|2202656649|ref|XM_047000960.1| 2897299 g39328 i0 90.385 0.218487394957983 52 4 22 1 168 219 1609 1559 PREDICTED: Xenia sp. Carnegie-2017 uridine-cytidine kinase-like 1 (LOC124450318), transcript variant X1, mRNA blastn 52 67.6 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Malacalcyonacea Xeniidae Xenia Xenia sp. Carnegie-2017

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;