RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA484127" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJNA484127 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8101579 8101579 PRJNA484127_P_NODE_24367_length_273_cov_1.560000_g24218_i0 PRJNA484127 24367 273 1.56 4.2588 Monoraphidium neglectum 145388 Plants Plants 231 3e-56   NTclustered gi|926777793|ref|XM_014041917.1| 145388 g24218 i0 85.398 61.9523809523809 226 29 82 3 20 243 242 19 Monoraphidium neglectum heat shock 70kDa protein 1/8 mRNA blastn 16913 231 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
16399889 16399889 PRJNA484127_P_NODE_37253_length_244_cov_0.912281_g37104_i0 PRJNA484127 37253 244 0.912281 2.22596564 Eukaryota 2759 Plants Plants 58.4 4.73e-4   NTclustered gi|2082241338|ref|XM_043060459.1| 3055 g37104 i0 100 12.4508196721311 31 0 13 0 77 107 5993 5963 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_03g146567v5), mRNA blastn 3038 58.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
19574373 19574373 PRJNA484127_P_NODE_29776_length_253_cov_0.866667_g29627_i0 PRJNA484127 29776 253 0.866667 2.19266751 Coccomyxa subellipsoidea 248742 Plants Plants 158 4.729999999999999e-34   NTclustered gi|545356038|ref|XM_005643719.1| 574566 g29627 i0 78.125 3.71541501976285 256 50 100 4 1 253 886 1138 Coccomyxa subellipsoidea C-169 nuclear RNA helicase-like protein Bat1 mRNA blastn 940 158 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;