RNAquarium Metadata Server
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contig_metadata

9 rows where analysis = "blastn", bioproject = "PRJNA482207" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 9 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA482207 · 9 ✖

analysis 1

  • blastn · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4274901 4274901 PRJNA482207_P_NODE_1804_length_680_cov_1.708402_g1711_i0 PRJNA482207 1804 680 1.708402 11.6171336 Bradybaena similaris 145626 Mollusca Mollusca 56.5 0.005   NTclustered gi|2912987826|dbj|AP039592.1| 145626 g1711 i0 97.059 0.05 34 0 5 1 557 589 10695198 10695165 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 11, sequence blastn 34 56.5 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
5551731 5551731 PRJNA482207_P_NODE_28225_length_243_cov_0.905882_g28115_i0 PRJNA482207 28225 243 0.905882 2.20129326 Mytilus edulis 6550 Mollusca Mollusca 102 2.14e-17   NTclustered gi|2912353022|ref|XM_071288351.1| 6550 g28115 i0 82.353 2.93415637860082 119 19 49 2 1 118 682 565 PREDICTED: Mytilus edulis kinesin-like protein KIF13A (LOC139499599), mRNA blastn 713 102 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus edulis
5551767 5551767 PRJNA482207_P_NODE_30025_length_241_cov_0.916667_g29915_i0 PRJNA482207 30025 241 0.916667 2.20916747 Biomphalaria glabrata 6526 Mollusca Mollusca 185 2.0499999999999998e-42   NTclustered gi|2502195816|ref|XM_056039804.1| 6526 g29915 i0 85.955 1.11618257261411 178 20 73 5 67 241 713 888 PREDICTED: Biomphalaria glabrata eukaryotic translation initiation factor 3 subunit G-like (LOC106064139), mRNA blastn 269 185 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Planorbidae Biomphalaria Biomphalaria glabrata
6825600 6825600 PRJNA482207_P_NODE_2466_length_589_cov_1.899225_g2360_i0 PRJNA482207 2466 589 1.899225 11.18643525 Gigantidas platifrons 2830794 Mollusca Mollusca 1070 0   NTclustered gi|1208315051|gb|KY242718.1| 2830794 g2360 i0 99.828 7.90492359932088 582 1 99 0 1 582 4908 5489 Gigantidas platifrons mitochondrion, complete genome blastn 4656 1070 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Gigantidas Gigantidas platifrons
8100912 8100912 PRJNA482207_P_NODE_12627_length_303_cov_1.986957_g12517_i0 PRJNA482207 12627 303 1.986957 6.02047971 Mytilus californianus 6549 Mollusca Mollusca 82.4 3.6e-11   NTclustered gi|2334630686|ref|XR_007989291.1| 6549 g12517 i0 74.561 0.752475247524752 228 39 72 16 87 303 402 183 PREDICTED: Mytilus californianus uncharacterized LOC127717681 (LOC127717681), ncRNA blastn 228 82.4 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus californianus
11926862 11926862 PRJNA482207_P_NODE_750_length_1009_cov_7.276709_g683_i0 PRJNA482207 750 1009 7.276709 73.42199381 Gigantidas platifrons 2830794 Mollusca Mollusca 1864 0   NTclustered gi|1043385544|dbj|AP014561.1| 2830794 g683 i0 100 101.215064420218 1009 0 100 0 1 1009 8099 9107 Gigantidas platifrons mitochondrial DNA, complete sequence blastn 102126 1864 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Gigantidas Gigantidas platifrons
12576217 12576217 PRJNA482207_P_NODE_4110_length_471_cov_1.366834_g4000_i0 PRJNA482207 4110 471 1.366834 6.43778814 Metazoa 33208 Mollusca Mollusca 870 0   NTclustered gi|1928112764|gb|MT947788.1| 6523 g4000 i0 100 99.8386411889597 471 0 100 0 1 471 1151 1621 Lymnaea stagnalis isolate Lsta_434075 hypothetical protein mRNA, complete cds blastn 47024 870 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Lymnaeidae Lymnaea Lymnaea stagnalis
17674789 17674789 PRJNA482207_P_NODE_12314_length_306_cov_1.317597_g12204_i0 PRJNA482207 12314 306 1.317597 4.03184682 Mytilus 6548 Mollusca Mollusca 351 2.51e-92   NTclustered gi|2912351232|ref|XM_071287770.1| 6550 g12204 i0 87.708 69.6830065359477 301 37 98 0 3 303 1175 1475 PREDICTED: Mytilus edulis elongation factor 1-alpha (LOC139499093), transcript variant X2, mRNA blastn 21323 351 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus edulis
20223575 20223575 PRJNA482207_P_NODE_28176_length_243_cov_0.905882_g28066_i0 PRJNA482207 28176 243 0.905882 2.20129326 Mytilus 6548 Mollusca Mollusca 182 2.68e-41   NTclustered gi|2912332097|ref|XM_071279386.1| 6550 g28066 i0 81.25 4.64197530864198 240 31 98 6 6 243 878 651 PREDICTED: Mytilus edulis small ribosomal subunit protein eS4-like (LOC139491616), mRNA blastn 1128 183 0.994535519125683 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus edulis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;