RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA482207" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA482207 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5551729 5551729 PRJNA482207_P_NODE_28125_length_243_cov_0.905882_g28015_i0 PRJNA482207 28125 243 0.905882 2.20129326 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 433 6.69e-117   NTclustered gi|219113438|ref|XM_002186267.1| 556484 g28015 i0 98.77 58.9547325102881 244 2 100 1 1 243 884 641 Phaeodactylum tricornutum CCAP 1055/1 translation elongation factor, EF-1, alpha subunit (EF-1), mRNA blastn 14326 433 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
22124380 22124380 PRJNA482207_P_NODE_17898_length_261_cov_1.574468_g17788_i0 PRJNA482207 17898 261 1.574468 4.10936148 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 455 1.55e-123   NTclustered gi|219113068|ref|XM_002186082.1| 556484 g17788 i0 98.084 1 261 5 100 0 1 261 706 446 Phaeodactylum tricornutum CCAP 1055/1 predicted protein mRNA blastn 261 455 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;