RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA482207" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 2 ✖

bioproject 1

  • PRJNA482207 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2998829 2998829 PRJNA482207_P_NODE_28263_length_243_cov_0.905882_g28153_i0 PRJNA482207 28263 243 0.905882 2.20129326 Fusobacterium pseudoperiodonticum 2663009 Bacteria Bacteria 438 1.4399999999999996e-118   NTclustered gi|1276709865|gb|CP024700.1| 2663009 g28153 i0 99.177 15.798353909465 243 2 100 0 1 243 2165112 2164870 Fusobacterium pseudoperiodonticum strain KCOM 1263 chromosome, complete genome blastn 3839 438 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium pseudoperiodonticum
19573786 19573786 PRJNA482207_P_NODE_22696_length_248_cov_0.880000_g22586_i0 PRJNA482207 22696 248 0.88 2.1824 Fusobacterium polymorphum 76857 Bacteria Bacteria 425 1.15e-114   NTclustered gi|2078816781|gb|CP071094.1| 76857 g22586 i0 97.581 99.0282258064516 248 6 100 0 1 248 415357 415110 Fusobacterium polymorphum strain THCT15E1 chromosome, complete genome blastn 24559 425 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;