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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA482207" and tax_clade = "Sar"

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tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA482207 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5551729 5551729 PRJNA482207_P_NODE_28125_length_243_cov_0.905882_g28015_i0 PRJNA482207 28125 243 0.905882 2.20129326 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 433 6.69e-117   NTclustered gi|219113438|ref|XM_002186267.1| 556484 g28015 i0 98.77 58.9547325102881 244 2 100 1 1 243 884 641 Phaeodactylum tricornutum CCAP 1055/1 translation elongation factor, EF-1, alpha subunit (EF-1), mRNA blastn 14326 433 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
6825531 6825531 PRJNA482207_P_NODE_21306_length_249_cov_1.619318_g21196_i0 PRJNA482207 21306 249 1.619318 4.03210182 Chilodonella uncinata 151077 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.023   NTclustered gi|149394719|gb|EF125701.1| 151077 g21196 i0 100 0.112449799196787 28 0 11 0 222 249 49 22 Chilodonella uncinata strain ATCC 50194 amidase-like gene, complete sequence; macronuclear blastn 28 52.8 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella uncinata
18948685 18948685 PRJNA482207_P_NODE_15655_length_278_cov_2.253659_g15545_i0 PRJNA482207 15655 278 2.253659 6.26517202 root 1 Root_unresolved Root_unresolved 514 2.7199999999999996e-141   NTclustered gi|354801984|gb|JN113287.1| 4787 g15545 i0 100 100 278 0 100 0 1 278 5990 6267 Phytophthora infestans transgenic clone Cu24_cyc_6_R1 retrotransposon gypsy-like, complete sequence; hygromycin phosphotransferase gene, complete cds; and retrotransposons gypsy-like, complete sequence blastn 27800 514 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
20849583 20849583 PRJNA482207_P_NODE_22917_length_248_cov_0.880000_g22807_i0 PRJNA482207 22917 248 0.88 2.1824 Moneuplotes crassus 5936 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.006   NTclustered gi|74039759|gb|DQ114962.1| 5936 g22807 i0 100 0.116935483870968 29 0 12 0 220 248 37 9 Moneuplotes crassus clone pEC14 putative MORN repeat protein (pEC14) gene, complete cds; macronuclear blastn 29 54.7 1 Eukaryota Sar   Ciliophora Spirotrichea Euplotida Euplotidae Moneuplotes Moneuplotes crassus
20849763 20849763 PRJNA482207_P_NODE_5997_length_399_cov_0.914110_g5887_i0 PRJNA482207 5997 399 0.91411 3.6472989 Aggregata octopiana 340708 SAR_Eukaryotes SAR_Eukaryotes 100 1.35e-16   NTclustered gi|73623569|gb|DQ096837.1| 340708 g5887 i0 77.473 0.609022556390977 182 32 44 7 110 284 4 183 Aggregata octopiana 18S ribosomal RNA gene, partial sequence blastn 243 100 1 Eukaryota Sar   Apicomplexa Marosporida   Aggregatidae Aggregata Aggregata octopiana
22124380 22124380 PRJNA482207_P_NODE_17898_length_261_cov_1.574468_g17788_i0 PRJNA482207 17898 261 1.574468 4.10936148 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 455 1.55e-123   NTclustered gi|219113068|ref|XM_002186082.1| 556484 g17788 i0 98.084 1 261 5 100 0 1 261 706 446 Phaeodactylum tricornutum CCAP 1055/1 predicted protein mRNA blastn 261 455 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;