RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA482207" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA482207 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1722704 1722704 PRJNA482207_P_NODE_20522_length_250_cov_0.870056_g20412_i0 PRJNA482207 20522 250 0.870056 2.17514 Crateriforma conspicua 2527996 Bacteria Bacteria 300 7.32e-77   NTclustered gi|1712751337|gb|CP036319.1| 2527996 g20412 i0 88.353 4.272 249 29 99 0 1 249 2167391 2167143 Crateriforma conspicua strain Mal65 chromosome blastn 1068 300 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Crateriforma Crateriforma conspicua
6825704 6825704 PRJNA482207_P_NODE_29606_length_242_cov_0.911243_g29496_i0 PRJNA482207 29606 242 0.911243 2.20520806 Stieleria magnilauensis 2527963 Bacteria Bacteria 237 5.61e-58   NTclustered gi|1712780605|gb|CP036432.1| 2527963 g29496 i0 84.746 59.5330578512397 236 36 98 0 1 236 10259379 10259614 Planctomycetes bacterium TBK1r chromosome blastn 14407 237 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Stieleria Stieleria magnilauensis
10651669 10651669 PRJNA482207_P_NODE_19889_length_251_cov_0.865169_g19779_i0 PRJNA482207 19889 251 0.865169 2.17157419 Crateriforma conspicua 2527996 Bacteria Bacteria 259 1.25e-64   NTclustered gi|1712751337|gb|CP036319.1| 2527996 g19779 i0 85.259 1 251 37 100 0 1 251 1743712 1743962 Crateriforma conspicua strain Mal65 chromosome blastn 251 259 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Crateriforma Crateriforma conspicua
17674823 17674823 PRJNA482207_P_NODE_21734_length_249_cov_0.875000_g21624_i0 PRJNA482207 21734 249 0.875 2.17875 Gimesia 1649453 Bacteria Bacteria 52.8 0.023   NTclustered gi|1712496122|gb|CP036269.1| 2527973 g21624 i0 100 0.224899598393574 28 0 11 0 128 155 7291762 7291789 Gimesia alba strain Pan241w chromosome blastn 56 52.8 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Gimesia Gimesia alba

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;