RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

22 rows where analysis = "blastn", bioproject = "PRJNA478247" and tax_phylum = "Ciliophora"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 22 ✖

tax_clade 1

bioproject 1

  • PRJNA478247 · 22 ✖

analysis 1

  • blastn · 22 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1722520 1722520 PRJNA478247_P_NODE_1182_length_361_cov_1.445783_g1076_i0 PRJNA478247 1182 361 1.445783 5.21927663 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 435 2.91e-117   NTclustered gi|829192652|ref|XM_001030092.3| 312017 g1076 i0 88.398 2.34072022160665 362 31 99 6 3 361 403 50 Tetrahymena thermophila SB210 40S ribosomal protein S8-2 partial mRNA blastn 845 435 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
2372652 2372652 PRJNA478247_P_NODE_1982_length_248_cov_2.237443_g1876_i0 PRJNA478247 1982 248 2.237443 5.54885864 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 263 9.519999999999998e-66   NTclustered gi|161736|gb|L01416.1|TETBTUBUB 5911 g1876 i0 86.667 82.6088709677419 240 28 96 4 11 248 1460 1223 Tetrahymena thermophila beta-tubulin (BTU2) gene, complete cds blastn 20487 263 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
4925286 4925286 PRJNA478247_P_NODE_1324_length_335_cov_1.990196_g1218_i0 PRJNA478247 1324 335 1.990196 6.6671566 Loxophyllum 39458 SAR_Eukaryotes SAR_Eukaryotes 449 9.59e-122   NTclustered gi|375305433|gb|JF975393.1| 416803 g1218 i0 90.882 100.573134328358 340 23 100 8 1 335 21 357 Loxophyllum jini isolate LXF07-6-21 28S ribosomal RNA gene, partial sequence blastn 33692 449 1 Eukaryota Sar   Ciliophora Litostomatea Pleurostomatida Litonotidae Loxophyllum Loxophyllum jini
4925287 4925287 PRJNA478247_P_NODE_3264_length_164_cov_2.822222_g3158_i0 PRJNA478247 3264 164 2.822222 4.62844408 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 189 1e-43   NTclustered gi|3366652|gb|AF031320.1|AF031320 5911 g3158 i0 88.961 1.8780487804878 154 15 93 2 12 164 786 634 Tetrahymena thermophila granule lattice protein 4 precursor (GRL4) mRNA, complete cds blastn 308 189 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
4925288 4925288 PRJNA478247_P_NODE_3564_length_153_cov_1.346774_g3458_i0 PRJNA478247 3564 153 1.346774 2.06056422 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 185 1.18e-42   NTclustered gi|315570290|tpg|BK007907.1| 5911 g3458 i0 90.21 1.86928104575163 143 12 93 2 12 153 786 645 TPA_exp: Tetrahymena thermophila 40S ribosomal protein rpS1e mRNA, complete cds blastn 286 185 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
6825337 6825337 PRJNA478247_P_NODE_1766_length_270_cov_1.788382_g1660_i0 PRJNA478247 1766 270 1.788382 4.8286314 Tetrahymena sp. KGE15 1200497 SAR_Eukaryotes SAR_Eukaryotes 499 7.349999999999998e-137   NTclustered gi|523704203|emb|HE861887.1| 1200497 g1660 i0 100 86.0814814814815 270 0 100 0 1 270 429 160 Tetrahymena sp. KGE15 partial 28S rRNA gene, strain KGE15 blastn 23242 499 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena sp. KGE15
8100856 8100856 PRJNA478247_P_NODE_3487_length_155_cov_2.000000_g3381_i0 PRJNA478247 3487 155 2 3.1 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 183 4.329999999999999e-42   NTclustered gi|829123749|ref|XM_001008606.3| 312017 g3381 i0 88.387 1 155 15 100 1 1 155 192 343 Tetrahymena thermophila SB210 60S ribosomal protein L38 partial mRNA blastn 155 183 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
8750110 8750110 PRJNA478247_P_NODE_1087_length_384_cov_2.546479_g981_i0 PRJNA478247 1087 384 2.546479 9.77847936 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 134 1.27e-26   NTclustered gi|3366652|gb|AF031320.1|AF031320 5911 g981 i0 76 1.43229166666667 275 56 70 9 7 276 836 1105 Tetrahymena thermophila granule lattice protein 4 precursor (GRL4) mRNA, complete cds blastn 550 134 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
11300380 11300380 PRJNA478247_P_NODE_3029_length_176_cov_1.918367_g2923_i0 PRJNA478247 3029 176 1.918367 3.37632592 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 326 7.92e-85   NTclustered gi|1621572405|gb|MH051920.1| 5893 g2923 i0 100 100 176 0 100 0 1 176 1521 1346 Tetrahymena borealis strain 1630/5A small subunit ribosomal RNA gene, partial sequence blastn 17600 326 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena borealis
11926414 11926414 PRJNA478247_P_NODE_3250_length_165_cov_1.617647_g3144_i0 PRJNA478247 3250 165 1.617647 2.66911755 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 244 2.12e-60   NTclustered gi|829198556|ref|XM_001027330.2| 312017 g3144 i0 93.827 0.981818181818182 162 10 98 0 1 162 5 166 Tetrahymena thermophila SB210 60S ribosomal protein L29 partial mRNA blastn 162 244 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
12576130 12576130 PRJNA478247_P_NODE_1490_length_308_cov_2.103943_g1384_i0 PRJNA478247 1490 308 2.103943 6.48014444 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 287 7.240000000000001e-73   NTclustered gi|161728|gb|M86723.1|TETATUB 5911 g1384 i0 83.946 36.1590909090909 299 48 97 0 10 308 1697 1399 Tetrahymena thermophila alpha-tubulin gene, complete cds blastn 11137 287 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
13201397 13201397 PRJNA478247_P_NODE_3111_length_172_cov_1.671329_g3005_i0 PRJNA478247 3111 172 1.671329 2.87468588 Paramecium tetraurelia 5888 SAR_Eukaryotes SAR_Eukaryotes 207 2.91e-49   NTclustered gi|2386258192|ref|XM_001455088.2| 5888 g3005 i0 88.372 84.9418604651163 172 20 100 0 1 172 202 373 Paramecium tetraurelia uncharacterized protein (GSPATT00021361001), mRNA blastn 14610 207 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium tetraurelia
14476323 14476323 PRJNA478247_P_NODE_1272_length_344_cov_6.793651_g1166_i0 PRJNA478247 1272 344 6.793651 23.37015944 Tetrahymena pyriformis 5908 SAR_Eukaryotes SAR_Eukaryotes 451 2.75e-122   NTclustered gi|10789|emb|X61053.1| 5908 g1166 i0 90.379 364.418604651163 343 33 99 0 1 343 652 994 T.pyriformis TU20 gene for ubiquitin blastn 125360 451 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena pyriformis
14476326 14476326 PRJNA478247_P_NODE_1652_length_284_cov_1.976471_g1546_i0 PRJNA478247 1652 284 1.976471 5.61317764 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 215 3.16e-51   NTclustered gi|229593638|ref|XM_001027526.3| 312017 g1546 i0 80.488 1.01056338028169 287 50 100 5 1 284 962 679 Tetrahymena thermophila SB210 Ndc1 protein partial mRNA blastn 287 215 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
14476332 14476332 PRJNA478247_P_NODE_972_length_416_cov_1.826873_g866_i0 PRJNA478247 972 416 1.826873 7.59979168 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 265 4.7199999999999995e-66   NTclustered gi|829199633|ref|XM_001028123.4| 312017 g866 i0 79.581 1.71875 382 68 91 9 3 379 800 424 Tetrahymena thermophila SB210 hypothetical protein partial mRNA blastn 715 265 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
15750418 15750418 PRJNA478247_P_NODE_3493_length_155_cov_1.785714_g3387_i0 PRJNA478247 3493 155 1.785714 2.7678567 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 185 1.2e-42   NTclustered gi|829186959|ref|XM_001022599.3| 312017 g3387 i0 91.176 0.87741935483871 136 12 88 0 20 155 264 129 Tetrahymena thermophila SB210 granule lattice protein partial mRNA blastn 136 185 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
18299344 18299344 PRJNA478247_P_NODE_1935_length_252_cov_2.134529_g1829_i0 PRJNA478247 1935 252 2.134529 5.37901308 Euplotes octocarinatus 2716877 SAR_Eukaryotes SAR_Eukaryotes 272 1.6099999999999999e-68   NTclustered gi|112383582|gb|DQ864704.1| 2716877 g1829 i0 90.385 23.1269841269841 208 18 82 2 45 251 1067 861 Euplotes octocarinatus beta2-tubulin (BTUB2) gene, complete cds blastn 5828 272 1 Eukaryota Sar   Ciliophora Spirotrichea Euplotida Euplotidae Euplotes Euplotes octocarinatus
19573560 19573560 PRJNA478247_P_NODE_2496_length_208_cov_3.150838_g2390_i0 PRJNA478247 2496 208 3.150838 6.55374304 Oxytricha granulifera 5947 SAR_Eukaryotes SAR_Eukaryotes 263 7.729999999999999e-66   NTclustered gi|9756|emb|Z11763.1| 5947 g2390 i0 89.423 41.5528846153846 208 22 100 0 1 208 862 1069 O.granulifera gene for alpha-tubulin blastn 8643 263 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Oxytricha Oxytricha granulifera
20223496 20223496 PRJNA478247_P_NODE_1456_length_312_cov_2.318021_g1350_i0 PRJNA478247 1456 312 2.318021 7.23222552 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 566 8.429999999999998e-157   NTclustered gi|1172880852|gb|KY864168.1| 5909 g1350 i0 99.359 99.9935897435897 312 2 100 0 1 312 887 576 Tetrahymena rostrata isolate TR small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 31198 571 0.991243432574431 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena rostrata
20223499 20223499 PRJNA478247_P_NODE_3096_length_172_cov_3.230769_g2990_i0 PRJNA478247 3096 172 3.230769 5.55692268 Sterkiella 94288 SAR_Eukaryotes SAR_Eukaryotes 161 2.3e-35   NTclustered gi|331686195|gb|HQ432921.1| 94289 g2990 i0 88.148 51.3604651162791 135 16 78 0 23 157 185 319 Sterkiella histriomuscorum strain BA elongation factor-1 (ef-1) gene, complete cds; macronuclear blastn 8834 161 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Sterkiella Sterkiella histriomuscorum
20849378 20849378 PRJNA478247_P_NODE_2517_length_207_cov_1.904494_g2411_i0 PRJNA478247 2517 207 1.904494 3.94230258 Epistylis sp. FG-2015 1607876 SAR_Eukaryotes SAR_Eukaryotes 302 1.63e-77   NTclustered gi|759083401|gb|KM222025.1| 1607876 g2411 i0 93.171 64.2995169082126 205 14 99 0 1 205 787 583 Epistylis sp. FG-2015 voucher SZ2011052302 alpha-tubulin gene, partial cds blastn 13310 302 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Epistylidae Epistylis Epistylis sp. FG-2015
21499000 21499000 PRJNA478247_P_NODE_2857_length_186_cov_2.031847_g2751_i0 PRJNA478247 2857 186 2.031847 3.77923542 root 1 Root_unresolved Root_unresolved 344 2.34e-90   NTclustered gi|1621572405|gb|MH051920.1| 5893 g2751 i0 100 99.9784946236559 186 0 100 0 1 186 1048 863 Tetrahymena borealis strain 1630/5A small subunit ribosomal RNA gene, partial sequence blastn 18596 344 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena borealis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;