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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA478247" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA478247 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2998495 2998495 PRJNA478247_P_NODE_2823_length_188_cov_3.238994_g2717_i0 PRJNA478247 2823 188 3.238994 6.08930872 Gromochytrium mamkaevae 1486924 Fungi Fungi 89.8 1.23e-13   NTclustered gi|612507318|gb|KF586842.1| 1486924 g2717 i0 94.737 3.49468085106383 57 3 30 0 132 188 6129 6185 Gromochytrium mamkaevae strain CALU x-51 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 657 89.8 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Gromochytriales Gromochytriaceae Gromochytrium Gromochytrium mamkaevae
5551416 5551416 PRJNA478247_P_NODE_2685_length_197_cov_1.988095_g2579_i0 PRJNA478247 2685 197 1.988095 3.91654715 Fimicolochytrium jonesii 1396493 Fungi Fungi 134 5.92e-27   NTclustered gi|2432051426|ref|XM_053072055.1| 1396493 g2579 i0 79.275 7.21827411167513 193 38 97 2 6 197 392 583 Fimicolochytrium jonesii ribosomal family S4e-domain-containing protein (EV422DRAFT_563332), partial mRNA blastn 1422 134 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii
6825341 6825341 PRJNA478247_P_NODE_2426_length_213_cov_2.119565_g2320_i0 PRJNA478247 2426 213 2.119565 4.51467345 Entophlyctis helioformis 281842 Fungi Fungi 257 3.7e-64   NTclustered gi|358030871|dbj|AB609169.1| 281842 g2320 i0 88.732 97.5492957746479 213 21 99 3 2 213 1646 1436 Entophlyctis helioformis EF2 gene for translation elongation factor 2, partial cds, isolate: AFTOL-ID 40 blastn 20778 257 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Entophlyctis Entophlyctis helioformis
11926411 11926411 PRJNA478247_P_NODE_1910_length_254_cov_1.400000_g1804_i0 PRJNA478247 1910 254 1.4 3.556 Polychytrium aggregatum 110093 Fungi Fungi 215 2.78e-51   NTclustered gi|2432158512|ref|XM_053111712.1| 110093 g1804 i0 82.101 77.5433070866142 257 40 100 6 1 254 317 570 Polychytrium aggregatum 40S ribosomal protein S13 (BJ171DRAFT_513016), mRNA blastn 19696 215 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
13201393 13201393 PRJNA478247_P_NODE_1951_length_251_cov_1.490991_g1845_i0 PRJNA478247 1951 251 1.490991 3.74238741 Fimicolochytrium jonesii 1396493 Fungi Fungi 150 7.84e-32   NTclustered gi|2432070021|ref|XM_053067041.1| 1396493 g1845 i0 87.597 46.9681274900398 129 16 51 0 117 245 179 307 Fimicolochytrium jonesii 60S ribosomal protein L21-A (EV422DRAFT_411829), mRNA blastn 11789 150 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii
13201394 13201394 PRJNA478247_P_NODE_2571_length_204_cov_2.040000_g2465_i0 PRJNA478247 2571 204 2.04 4.1616 Fimicolochytrium jonesii 1396493 Fungi Fungi 154 4.74e-33   NTclustered gi|2432097059|ref|XM_053068802.1| 1396493 g2465 i0 81 64.3333333333333 200 33 96 3 8 203 192 390 Fimicolochytrium jonesii ribosomal S3Ae family-domain-containing protein (EV422DRAFT_508972), partial mRNA blastn 13124 154 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii
16399725 16399725 PRJNA478247_P_NODE_1893_length_255_cov_2.907080_g1787_i0 PRJNA478247 1893 255 2.90708 7.413054 Opisthokonta 33154 Fungi Fungi 187 6.089999999999998e-43   NTclustered gi|82398309|gb|DQ273787.1| 64517 g1787 i0 95.69 49.7411764705882 116 5 45 0 1 116 2269 2154 Rhizophlyctis rosea isolate AFTOL-ID 43 28S ribosomal RNA gene, partial sequence blastn 12684 187 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophlyctidales Rhizophlyctidaceae Rhizophlyctis Rhizophlyctis rosea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;