RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA478247" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 4 ✖

bioproject 1

  • PRJNA478247 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5551420 5551420 PRJNA478247_P_NODE_3585_length_152_cov_1.699187_g3479_i0 PRJNA478247 3585 152 1.699187 2.58276424 Stichococcus bacillaris 37433 Plants Plants 248 1.48e-61   NTclustered gi|115430291|emb|AM260460.1| 37433 g3479 i0 96.053 99.9736842105263 152 6 100 0 1 152 64 215 Stichococcus bacillaris partial 26S rRNA gene, strain SAG 379-1b blastn 15196 248 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus bacillaris
16399726 16399726 PRJNA478247_P_NODE_2533_length_206_cov_2.457627_g2427_i0 PRJNA478247 2533 206 2.457627 5.06271162 Eukaryota 2759 Plants Plants 259 9.89e-65   NTclustered gi|2082262574|ref|XM_001694020.2| 3055 g2427 i0 89.32 99.0291262135922 206 22 100 0 1 206 304 509 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_12g542250v5), mRNA blastn 20400 261 0.992337164750958 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
17025038 17025038 PRJNA478247_P_NODE_1134_length_373_cov_4.517442_g1028_i0 PRJNA478247 1134 373 4.517442 16.85005866 Valonia macrophysa 432605 Plants Plants 449 1.0799999999999998e-121   NTclustered gi|969822378|gb|KT950956.1| 432605 g1028 i0 89.548 93.0160857908847 354 37 95 0 20 373 12 365 Valonia macrophysa isolate 1528 actin gene, partial cds blastn 34695 449 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Cladophorales Valoniaceae Valonia Valonia macrophysa
22774131 22774131 PRJNA478247_P_NODE_2818_length_189_cov_1.618750_g2712_i0 PRJNA478247 2818 189 1.61875 3.0594375 Eukaryota 2759 Plants Plants 104 4.41e-18   NTclustered gi|2082259818|ref|XM_001690833.2| 3055 g2712 i0 85.714 1.92063492063492 98 14 52 0 60 157 197 100 Chlamydomonas reinhardtii ribosomal protein L18 (CHLRE_12g512600v5), mRNA blastn 363 104 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;