RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "blastn", bioproject = "PRJNA474911" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 1 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA474911 · 1 ✖

analysis 1

  • blastn · 1 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17674699 17674699 PRJNA474911_P_NODE_5554_length_239_cov_2.151685_g5427_i0 PRJNA474911 5554 239 2.151685 5.14252715 Rhabditophora 147100 Platyhelminthes Platyhelminthes 185 2.0299999999999994e-42   NTclustered gi|28273268|gb|AY157156.1| 84079 g5427 i0 89.865 62.7238493723849 148 9 62 5 93 239 2894 2752 Geocentrophora wagini 28S large subunit ribosomal RNA gene, partial sequence blastn 14991 185 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Lecithoepitheliata Prorhynchidae Geocentrophora Geocentrophora wagini

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;