RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA474911" and tax_phylum = "Euglenozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA474911 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2998357 2998357 PRJNA474911_P_NODE_3863_length_300_cov_1.288703_g3736_i0 PRJNA474911 3863 300 1.288703 3.866109 Neobodo designis 312471 Euglenozoa other_Eukaryota 527 3.799999999999999e-145   NTclustered gi|225216795|gb|FJ176710.1| 312471 g3736 i0 98.333 101.356666666667 300 5 100 0 1 300 632 931 Neobodo designis HFCC95 28S ribosomal RNA gene, partial sequence blastn 30407 527 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida   Neobodo Neobodo designis
6825210 6825210 PRJNA474911_P_NODE_5346_length_245_cov_2.733696_g5219_i0 PRJNA474911 5346 245 2.733696 6.6975552 Neobodo designis 312471 Euglenozoa other_Eukaryota 396 8.869999999999996e-106   NTclustered gi|197723537|gb|EF681922.2| 312471 g5219 i0 95.918 159.408163265306 245 9 100 1 1 245 1216 973 Neobodo designis strain HFCC97 28S ribosomal RNA gene, partial sequence blastn 39055 396 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida   Neobodo Neobodo designis
18299200 18299200 PRJNA474911_P_NODE_7955_length_203_cov_0.901408_g7828_i0 PRJNA474911 7955 203 0.901408 1.82985824 Leptomonas pyrrhocoris 157538 Euglenozoa other_Eukaryota 108 3.72e-19   NTclustered gi|1002434824|ref|XM_015808868.1| 157538 g7828 i0 93.151 13.0443349753695 73 5 36 0 115 187 220 148 Leptomonas pyrrhocoris putative ribosomal protein l38 mRNA blastn 2648 108 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leptomonas Leptomonas pyrrhocoris

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;