RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA474911" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA474911 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7475078 7475078 PRJNA474911_P_NODE_6046_length_228_cov_1.485030_g5919_i0 PRJNA474911 6046 228 1.48503 3.3858684 Deinococcus 1298 Bacteria Bacteria 383 6.35e-102   NTclustered gi|2264081587|gb|CP094462.1| 1299 g5919 i0 96.93 211.324561403509 228 7 100 0 1 228 1217168 1217395 Deinococcus radiodurans strain BRD125 chromosome 1, complete sequence blastn 48182 383 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus radiodurans
15125033 15125033 PRJNA474911_P_NODE_7512_length_206_cov_0.882759_g7385_i0 PRJNA474911 7512 206 0.882759 1.81848354 Deinococcus 1298 Bacteria Bacteria 372 1.2199999999999997e-98   NTclustered gi|730601855|gb|CP010028.1| 57497 g7385 i0 99.51 224.95145631068 204 1 99 0 3 206 70442 70645 Deinococcus swuensis strain DY59, complete genome blastn 46340 372 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus radiopugnans
17024898 17024898 PRJNA474911_P_NODE_4854_length_261_cov_1.140000_g4727_i0 PRJNA474911 4854 261 1.14 2.9754 Deinococcus radiophilus 32062 Bacteria Bacteria 403 5.6999999999999985e-108   NTclustered gi|2152123021|gb|CP086380.1| 32062 g4727 i0 94.361 443.501915708812 266 10 100 5 1 261 1813735 1814000 Deinococcus radiophilus strain ATCC 27603 chromosome, complete genome blastn 115754 403 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus radiophilus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;