RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA474911" and tax_clade = "Sar"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

bioproject 1

  • PRJNA474911 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1722392 1722392 PRJNA474911_P_NODE_5522_length_240_cov_1.430168_g5395_i0 PRJNA474911 5522 240 1.430168 3.4324032 Plasmodium vinckei 5860 SAR_Eukaryotes SAR_Eukaryotes 261 3.2900000000000007e-65   NTclustered gi|669202240|ref|XM_008627895.1| 54757 g5395 i0 87.124 8.74166666666667 233 26 96 2 10 240 860 630 Plasmodium vinckei vinckei 26S protease regulatory subunit 6B, putative (PVVCY_0701540), partial mRNA blastn 2098 261 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium vinckei
9375449 9375449 PRJNA474911_P_NODE_8248_length_201_cov_1.300000_g8121_i0 PRJNA474911 8248 201 1.3 2.613 uncultured dinoflagellate 187300 SAR_Eukaryotes SAR_Eukaryotes 117 6.11e-22   NTclustered gi|309254024|gb|GU553960.1| 187300 g8121 i0 82.014 9.98507462686567 139 23 69 2 62 199 515 378 uncultured dinoflagellate clone AP-cDNA40 mRNA sequence blastn 2007 117 1 Eukaryota Sar     Dinophyceae       uncultured dinoflagellate

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;