RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA474911" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 5 ✖

bioproject 1

  • PRJNA474911 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2998357 2998357 PRJNA474911_P_NODE_3863_length_300_cov_1.288703_g3736_i0 PRJNA474911 3863 300 1.288703 3.866109 Neobodo designis 312471 Euglenozoa other_Eukaryota 527 3.799999999999999e-145   NTclustered gi|225216795|gb|FJ176710.1| 312471 g3736 i0 98.333 101.356666666667 300 5 100 0 1 300 632 931 Neobodo designis HFCC95 28S ribosomal RNA gene, partial sequence blastn 30407 527 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida   Neobodo Neobodo designis
6200198 6200198 PRJNA474911_P_NODE_5265_length_248_cov_1.368984_g5138_i0 PRJNA474911 5265 248 1.368984 3.39508032 Naegleria 5761 Heterolobosea other_Eukaryota 158 4.62e-34   NTclustered gi|2618963742|gb|OR769034.1| 5762 g5138 i0 85.811 46.866935483871 148 21 60 0 101 248 5050 5197 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 11623 158 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
6825210 6825210 PRJNA474911_P_NODE_5346_length_245_cov_2.733696_g5219_i0 PRJNA474911 5346 245 2.733696 6.6975552 Neobodo designis 312471 Euglenozoa other_Eukaryota 396 8.869999999999996e-106   NTclustered gi|197723537|gb|EF681922.2| 312471 g5219 i0 95.918 159.408163265306 245 9 100 1 1 245 1216 973 Neobodo designis strain HFCC97 28S ribosomal RNA gene, partial sequence blastn 39055 396 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida   Neobodo Neobodo designis
10651316 10651316 PRJNA474911_P_NODE_4869_length_260_cov_2.241206_g4742_i0 PRJNA474911 4869 260 2.241206 5.8271356 Vahlkampfia sp. 1874882 Heterolobosea other_Eukaryota 193 1.34e-44   NTclustered gi|2651357786|gb|PP174301.1| 1874882 g4742 i0 93.75 47.1307692307692 128 8 49 0 12 139 3979 3852 Vahlkampfia sp. isolate 24M small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 12254 193 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia sp.
18299200 18299200 PRJNA474911_P_NODE_7955_length_203_cov_0.901408_g7828_i0 PRJNA474911 7955 203 0.901408 1.82985824 Leptomonas pyrrhocoris 157538 Euglenozoa other_Eukaryota 108 3.72e-19   NTclustered gi|1002434824|ref|XM_015808868.1| 157538 g7828 i0 93.151 13.0443349753695 73 5 36 0 115 187 220 148 Leptomonas pyrrhocoris putative ribosomal protein l38 mRNA blastn 2648 108 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leptomonas Leptomonas pyrrhocoris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;