RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA474426" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA474426 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9375278 9375278 PRJNA474426_P_NODE_1908_length_699_cov_2.118462_g1764_i0 PRJNA474426 1908 699 2.118462 14.80804938 Leptospira iowaensis 3235171 Bacteria Bacteria 1223 0   NTclustered gi|2777203535|gb|CP162142.1| 3235171 g1764 i0 99.261 183.535050071531 677 5 97 0 9 685 2717943 2718619 Leptospira iowaensis strain WS39.C2 chromosome 1, complete sequence blastn 128291 1223 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Leptospira Leptospira iowaensis
18299109 18299109 PRJNA474426_P_NODE_35135_length_164_cov_0.886957_g34930_i0 PRJNA474426 35135 164 0.886957 1.45460948 Treponema sp. OMZ 305 1659192 Bacteria Bacteria 298 1.59e-76   NTclustered gi|2265133351|gb|CP051300.1| 1659192 g34930 i0 99.39 5 164 1 100 0 1 164 1010453 1010290 Treponema sp. OMZ 305 chromosome, complete genome blastn 820 298 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp. OMZ 305
22773914 22773914 PRJNA474426_P_NODE_33698_length_166_cov_0.871795_g33493_i0 PRJNA474426 33698 166 0.871795 1.4471797 Turneriella 338321 Bacteria Bacteria 215 1.68e-51   NTclustered gi|470489162|ref|NR_076910.1| 29510 g33493 i0 96.875 2.87349397590361 128 4 93 0 13 140 1665 1538 Turneriella parva strain DSM 21527 23S ribosomal RNA gene, complete sequence blastn 477 215 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Turneriella Turneriella parva
22773962 22773962 PRJNA474426_P_NODE_6998_length_409_cov_2.080556_g6794_i0 PRJNA474426 6998 409 2.080556 8.50947404 Leptospira 171 Bacteria Bacteria 366 1.2299999999999996e-96   NTclustered gi|167774246|gb|CP000777.1| 355278 g6794 i0 85 1.76039119804401 360 54 88 0 1 360 719613 719972 Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' chromosome I, complete sequence blastn 720 366 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Leptospira Leptospira biflexa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;