RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA474426" and tax_phylum = "Planctomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA474426 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2998203 2998203 PRJNA474426_P_NODE_23323_length_204_cov_1.148387_g23118_i0 PRJNA474426 23323 204 1.148387 2.34270948 Caulifigura coniformis 2527983 Bacteria Bacteria 189 1.2999999999999996e-43   NTclustered gi|1712508784|gb|CP036271.1| 2527983 g23118 i0 86.441 171.617647058824 177 19 86 5 1 175 2926760 2926933 Caulifigura coniformis strain Pan44 chromosome blastn 35010 189 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Caulifigura Caulifigura coniformis
4274549 4274549 PRJNA474426_P_NODE_9304_length_354_cov_1.177049_g9099_i0 PRJNA474426 9304 354 1.177049 4.16675346 Phycisphaerales bacterium 2052180 Bacteria Bacteria 302 3.01e-77   NTclustered gi|1958061316|gb|CP064987.1| 2052180 g9099 i0 83.333 377.661016949153 348 36 97 16 12 354 2190485 2190815 Phycisphaerales bacterium isolate Fred_18-Q3-R57-64_MAXAC.330_cln chromosome, complete genome blastn 133692 302 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales     Phycisphaerales bacterium
22123924 22123924 PRJNA474426_P_NODE_24318_length_198_cov_2.966443_g24113_i0 PRJNA474426 24318 198 2.966443 5.87355714 Sedimentisphaerales bacterium 2813034 Bacteria Bacteria 56.5 0.001   NTclustered gi|2874254109|emb|OY970194.1| 2813034 g24113 i0 100 0.151515151515152 30 0 15 0 82 111 1744381 1744352 MAG: Sedimentisphaerales bacterium isolate MFD00905.bin.c.1 genome assembly, chromosome: 1 blastn 30 56.5 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Sedimentisphaerales     Sedimentisphaerales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;