RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA474426" and tax_phylum = "Nitrospirota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA474426 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2998157 2998157 PRJNA474426_P_NODE_1523_length_756_cov_8.908062_g1392_i0 PRJNA474426 1523 756 8.908062 67.34494872 Nitrospira moscoviensis 42253 Bacteria Bacteria 926 0   NTclustered gi|922305621|gb|CP011801.1| 42253 g1392 i0 89.972 38.3425925925926 718 70 95 2 30 746 4275508 4276224 Nitrospira moscoviensis strain NSP M-1, complete genome blastn 28987 926 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira moscoviensis
20849034 20849034 PRJNA474426_P_NODE_12617_length_296_cov_8.659919_g12412_i0 PRJNA474426 12617 296 8.659919 25.63336024 Nitrospira sp. 70125 Bacteria Bacteria 442 1.4e-119   NTclustered gi|2194428397|gb|CP092079.1| 70125 g12412 i0 96.97 145.472972972973 264 7 89 1 9 272 2506550 2506812 MAG: Nitrospira sp. isolate UBC3 chromosome blastn 43060 442 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
24673615 24673615 PRJNA474426_P_NODE_2800_length_609_cov_3.671429_g2634_i0 PRJNA474426 2800 609 3.671429 22.35900261 Nitrospira moscoviensis 42253 Bacteria Bacteria 1061 0   NTclustered gi|922305621|gb|CP011801.1| 42253 g2634 i0 100 6.05911330049261 574 0 100 0 36 609 4003292 4003865 Nitrospira moscoviensis strain NSP M-1, complete genome blastn 3690 1061 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira moscoviensis
24673650 24673650 PRJNA474426_P_NODE_34380_length_165_cov_0.879310_g34175_i0 PRJNA474426 34380 165 0.87931 1.4508615 Nitrospira sp. 70125 Bacteria Bacteria 154 3.68e-33   NTclustered gi|2194428397|gb|CP092079.1| 70125 g34175 i0 87.786 0.793939393939394 131 16 79 0 35 165 3283232 3283362 MAG: Nitrospira sp. isolate UBC3 chromosome blastn 131 154 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;