RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA474426" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA474426 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10025315 10025315 PRJNA474426_P_NODE_8988_length_360_cov_2.672026_g8783_i0 PRJNA474426 8988 360 2.672026 9.6192936 Cephalobidae 29166 Nematoda Nematoda 590 5.849999999999998e-164   NTclustered gi|76560651|gb|DQ145676.1| 345482 g8783 i0 97.143 96.7277777777778 350 9 97 1 11 360 257 605 Cephalobus sp. JB-67 28S ribosomal RNA gene, partial sequence blastn 34822 590 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Cephalobidae Cephalobus Cephalobus sp. JB-67
18948384 18948384 PRJNA474426_P_NODE_24795_length_196_cov_1.551020_g24590_i0 PRJNA474426 24795 196 1.55102 3.0399992 Rhabditida 6236 Nematoda Nematoda 339 1.16e-88   NTclustered gi|284507052|dbj|AB478628.1| 49351 g24590 i0 100 93.3673469387755 183 0 93 0 14 196 356 174 Zeldia punctata gene for 18S ribosomal RNA, partial sequence blastn 18300 339 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Cephalobidae Zeldia Zeldia punctata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;