RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA474426" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA474426 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6825113 6825113 PRJNA474426_P_NODE_33566_length_166_cov_0.880342_g33361_i0 PRJNA474426 33566 166 0.880342 1.46136772 uncultured Acidobacteriaceae bacterium 194844 Bacteria Bacteria 99 1.76e-16   NTclustered gi|2874253980|emb|OY970305.1| 194844 g33361 i0 81.148 1.46385542168675 122 23 73 0 15 136 1462710 1462831 MAG: uncultured Acidobacteriaceae bacterium isolate MFD03726.bin.c.10 genome assembly, chromosome: 1 blastn 243 99 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae   uncultured Acidobacteriaceae bacterium
11926234 11926234 PRJNA474426_P_NODE_8770_length_365_cov_1.142405_g8565_i0 PRJNA474426 8770 365 1.142405 4.16977825 Tunturiibacter lichenicola 2051959 Bacteria Bacteria 165 4.26e-36   NTclustered gi|2304905231|gb|CP073696.1| 2051959 g8565 i0 82.796 0.96986301369863 186 31 51 1 13 198 1788877 1789061 Tunturiibacter lichenicola strain DSM 104462 chromosome, complete genome blastn 354 165 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Tunturiibacter Tunturiibacter lichenicola
13201196 13201196 PRJNA474426_P_NODE_4291_length_513_cov_2.461207_g4099_i0 PRJNA474426 4291 513 2.461207 12.62599191 Acidobacteriota bacterium 1978231 Bacteria Bacteria 785 0   NTclustered gi|1958085512|gb|CP065000.1| 1978231 g4099 i0 94.664 115.372319688109 506 27 99 0 8 513 3299327 3298822 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.078_cln chromosome, complete genome blastn 59186 785 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
14476032 14476032 PRJNA474426_P_NODE_25272_length_194_cov_1.082759_g25067_i0 PRJNA474426 25272 194 1.082759 2.10055246 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 237 4.31e-58   NTclustered gi|2874253692|emb|OY969418.1| 171953 g25067 i0 89.418 194.649484536082 189 18 97 2 1 188 4232284 4232471 MAG: uncultured Acidobacteriota bacterium isolate MFD09212.bin.c.1 genome assembly, chromosome: 1 blastn 37762 237 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
15750158 15750158 PRJNA474426_P_NODE_29373_length_177_cov_1.992188_g29168_i0 PRJNA474426 29373 177 1.992188 3.52617276 Bryobacterales bacterium F-183 2802972 Bacteria Bacteria 217 5.01e-52   NTclustered gi|2131941663|dbj|AP025252.1| 2802972 g29168 i0 89.143 45.2372881355932 175 17 98 2 5 177 634947 634773 Bryobacterales bacterium F-183 DNA, nearly complete genome blastn 8007 217 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales     Bryobacterales bacterium F-183
18299070 18299070 PRJNA474426_P_NODE_30935_length_172_cov_1.008130_g30730_i0 PRJNA474426 30935 172 1.00813 1.7339836 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 268 1.32e-67   NTclustered gi|2874253692|emb|OY969418.1| 171953 g30730 i0 94.767 6.05813953488372 172 9 100 0 1 172 4233711 4233540 MAG: uncultured Acidobacteriota bacterium isolate MFD09212.bin.c.1 genome assembly, chromosome: 1 blastn 1042 268 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;