RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA474426" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 4 ✖

bioproject 1

  • PRJNA474426 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6825040 6825040 PRJNA474426_P_NODE_20426_length_221_cov_1.191860_g20221_i0 PRJNA474426 20426 221 1.19186 2.6340106 Deinococcus taeanensis 2737050 Bacteria Bacteria 241 3.8900000000000003e-59   NTclustered gi|2105694697|gb|CP083456.1| 2737050 g20221 i0 92.353 159.045248868778 170 11 94 2 53 221 1578 1746 Deinococcus taeanensis strain TS293 plasmid p_TS293_2, complete sequence blastn 35149 241 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus taeanensis
7474990 7474990 PRJNA474426_P_NODE_7926_length_383_cov_4.517964_g7721_i0 PRJNA474426 7926 383 4.517964 17.30380212 Deinococcus 1298 Bacteria Bacteria 603 8.039999999999998e-168   NTclustered gi|1435316362|gb|CP031158.1| 980427 g7721 i0 100 176.331592689295 326 0 85 0 43 368 1792225 1791900 Deinococcus wulumuqiensis strain NEB 479 chromosome, complete genome blastn 67535 603 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus wulumuqiensis
10651145 10651145 PRJNA474426_P_NODE_19429_length_227_cov_2.292135_g19224_i0 PRJNA474426 19429 227 2.292135 5.20314645 Deinococcus altitudinis 468914 Bacteria Bacteria 375 1.06e-99   NTclustered gi|2865404944|gb|CP129415.1| 468914 g19224 i0 96.476 219.986784140969 227 8 100 0 1 227 413755 413981 Deinococcus altitudinis strain LMG 24022 chromosome, complete genome blastn 49937 375 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus altitudinis
24048832 24048832 PRJNA474426_P_NODE_27479_length_185_cov_1.132353_g27274_i0 PRJNA474426 27479 185 1.132353 2.09485305 Deinococcus 1298 Bacteria Bacteria 243 8.73e-60   NTclustered gi|2865404944|gb|CP129415.1| 468914 g27274 i0 91.62 166 179 9 96 5 1 177 2511886 2512060 Deinococcus altitudinis strain LMG 24022 chromosome, complete genome blastn 30710 243 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus altitudinis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;