RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA474426" and tax_kingdom = "Fusobacteriati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 3 ✖

bioproject 1

  • PRJNA474426 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6825019 6825019 PRJNA474426_P_NODE_1706_length_728_cov_7.561119_g1565_i0 PRJNA474426 1706 728 7.561119 55.04494632 Leptotrichia sp. HMT-225 3058373 Bacteria Bacteria 1345 0   NTclustered gi|2557559843|gb|CP130323.1| 3058373 g1565 i0 100 552.888736263736 728 0 100 0 1 728 197655 198382 Leptotrichia sp. HMT-225 chromosome, complete genome blastn 402503 1345 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. HMT-225
9375235 9375235 PRJNA474426_P_NODE_12528_length_298_cov_1.477912_g12323_i0 PRJNA474426 12528 298 1.477912 4.40417776 Fusobacterium pseudoperiodonticum 2663009 Bacteria Bacteria 483 8.29e-132   NTclustered gi|1276716588|gb|CP024703.1| 2663009 g12323 i0 99.621 502.731543624161 264 1 100 0 35 298 1579531 1579268 Fusobacterium pseudoperiodonticum strain KCOM 2305 chromosome, complete genome blastn 149814 483 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium pseudoperiodonticum
24673622 24673622 PRJNA474426_P_NODE_2880_length_601_cov_6.074275_g2713_i0 PRJNA474426 2880 601 6.074275 36.50639275 Leptotrichia sp. HMT-225 3058373 Bacteria Bacteria 590 1.0199999999999999e-163   NTclustered gi|2557559843|gb|CP130323.1| 3058373 g2713 i0 100 118.404326123128 319 0 96 0 13 331 195185 194867 Leptotrichia sp. HMT-225 chromosome, complete genome blastn 71161 590 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. HMT-225

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;