RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA474426" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 4 ✖

bioproject 1

  • PRJNA474426 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6199994 6199994 PRJNA474426_P_NODE_20445_length_221_cov_1.046512_g20240_i0 PRJNA474426 20445 221 1.046512 2.31279152 Trypanosomatidae 5654 Euglenozoa other_Eukaryota 335 1.7399999999999996e-87   NTclustered gi|60098345|emb|AJ843897.1| 296131 g20240 i0 98.421 81.3122171945701 190 3 99 0 32 221 141 330 Herpetomonas sp. SC_UKF5 18S rRNA gene, strain SC_UKF5 blastn 17970 335 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Herpetomonas Herpetomonas sp. SC_UKF5
13201215 13201215 PRJNA474426_P_NODE_8611_length_368_cov_2.576803_g8406_i0 PRJNA474426 8611 368 2.576803 9.48263504 Trypanosoma theileri 67003 Euglenozoa other_Eukaryota 396 1.3999999999999994e-105   NTclustered gi|2026667530|dbj|LC618030.1| 67003 g8406 i0 86.908 127.766304347826 359 40 96 6 12 363 4774 4416 Trypanosoma theileri YMG-11 genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, ITS3, ITS4, ITS5, partial and complete sequence blastn 47018 396 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma theileri
25323034 25323034 PRJNA474426_P_NODE_17680_length_241_cov_3.229167_g17475_i0 PRJNA474426 17680 241 3.229167 7.78229247 Leishmania 5658 Euglenozoa other_Eukaryota 250 7.17e-62   NTclustered gi|440222388|gb|JX030056.1| 5659 g17475 i0 97.917 75.5850622406639 144 3 60 0 12 155 39 182 Leishmania amazonensis isolate LaPH8.rRNA.32 28S ribosomal RNA (LSU-delta M2), partial sequence blastn 18216 252 0.992063492063492 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania amazonensis
25323128 25323128 PRJNA474426_P_NODE_28780_length_180_cov_1.030534_g28575_i0 PRJNA474426 28780 180 1.030534 1.8549612 Neobodo 312470 Euglenozoa other_Eukaryota 292 8.26e-75   NTclustered gi|197723536|gb|EF681921.2| 312471 g28575 i0 98.204 135.288888888889 167 3 93 0 14 180 395 229 Neobodo designis strain HFCC9 28S ribosomal RNA gene, partial sequence blastn 24352 294 0.993197278911565 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida   Neobodo Neobodo designis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;