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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA474426" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 5 ✖

bioproject 1

  • PRJNA474426 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2998243 2998243 PRJNA474426_P_NODE_31023_length_171_cov_2.147541_g30818_i0 PRJNA474426 31023 171 2.147541 3.67229511 Paravannella minima 1443144 Discosea other_Eukaryota 158 2.9499999999999992e-34   NTclustered gi|571331048|gb|KF895375.1| 1443144 g30818 i0 94.898 1.27485380116959 98 5 57 0 8 105 98 1 Paravannella minima strain CCAP 1533/1 18S ribosomal RNA gene, partial sequence blastn 218 158 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Paravannella Paravannella minima
6825168 6825168 PRJNA474426_P_NODE_9586_length_348_cov_0.939799_g9381_i0 PRJNA474426 9586 348 0.939799 3.27050052 Thecamoeba similis 242545 Discosea other_Eukaryota 375 1.7199999999999998e-99   NTclustered gi|2814912900|gb|PQ451966.1| 242545 g9381 i0 96.476 55.3505747126437 227 8 65 0 84 310 551 325 Thecamoeba similis strain SmiTi1 small subunit ribosomal RNA gene, partial sequence blastn 19262 375 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Thecamoeba Thecamoeba similis
15750183 15750183 PRJNA474426_P_NODE_33433_length_166_cov_0.888889_g33228_i0 PRJNA474426 33433 166 0.888889 1.47555574 Entamoeba moshkovskii 41668 Evosea other_Eukaryota 279 5.86e-71   NTclustered gi|148923244|gb|EF421298.1| 41668 g33228 i0 97.006 1.00602409638554 167 4 100 1 1 166 110 276 Entamoeba moshkovskii strain FIC tRNA array unit type 1 WI1 genomic sequence blastn 167 279 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba moshkovskii
17024790 17024790 PRJNA474426_P_NODE_29834_length_176_cov_0.968504_g29629_i0 PRJNA474426 29834 176 0.968504 1.70456704 Paravannella minima 1443144 Discosea other_Eukaryota 315 1.7199999999999996e-81   NTclustered gi|571331048|gb|KF895375.1| 1443144 g29629 i0 98.864 100.238636363636 176 2 100 0 1 176 1061 1236 Paravannella minima strain CCAP 1533/1 18S ribosomal RNA gene, partial sequence blastn 17642 315 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Paravannella Paravannella minima
18299007 18299007 PRJNA474426_P_NODE_20775_length_219_cov_0.911765_g20570_i0 PRJNA474426 20775 219 0.911765 1.99676535 Entamoeba moshkovskii 41668 Evosea other_Eukaryota 196 8.46e-46   NTclustered gi|148923243|gb|EF421297.1| 41668 g20570 i0 99.083 0.497716894977169 109 1 50 0 111 219 136 244 Entamoeba moshkovskii strain FIC tRNA array unit HisGTG genomic sequence blastn 109 196 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba moshkovskii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;