RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA473824" and tax_phylum = "Verrucomicrobiota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA473824 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5550045 5550045 PRJNA473824_P_NODE_146425_length_151_cov_4.175439_g145787_i0 PRJNA473824 146425 151 4.175439 6.30491289 Oleiharenicola sp. Vm1 3398393 Bacteria Bacteria 67.6 4.4e-7   NTclustered gi|2912653302|gb|CP180537.1| 3398393 g145787 i0 100 0.47682119205298 36 0 24 0 41 76 4517732 4517767 Oleiharenicola sp. Vm1 chromosome, complete genome blastn 72 67.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Oleiharenicola Oleiharenicola sp. Vm1
8100124 8100124 PRJNA473824_P_NODE_46647_length_180_cov_2.944056_g46009_i0 PRJNA473824 46647 180 2.944056 5.2993008 Congregicoccus parvus 3081749 Bacteria Bacteria 80.5 7e-11   NTclustered gi|2599616993|dbj|AP028972.1| 3081749 g46009 i0 90.164 0.338888888888889 61 6 34 0 1 61 290932 290872 Opitutales bacterium ASA1 DNA, complete genome blastn 61 80.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Alterococcaceae Congregicoccus Congregicoccus parvus
11299893 11299893 PRJNA473824_P_NODE_7249_length_525_cov_1.946721_g6674_i0 PRJNA473824 7249 525 1.946721 10.22028525 Verrucomicrobiota 74201 Bacteria Bacteria 525 2.5199999999999995e-144   NTclustered gi|183579829|emb|AM905426.1| 320771 g6674 i0 84.82 90.3352380952381 527 75 100 5 1 525 737 214 Bacterium Ellin514 23S rRNA gene, isolate Ellin514 blastn 47426 525 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Pedosphaerae Pedosphaerales Pedosphaeraceae Pedosphaera Pedosphaera parvula
13200762 13200762 PRJNA473824_P_NODE_55271_length_173_cov_5.720588_g54633_i0 PRJNA473824 55271 173 5.720588 9.89661724 Roseimicrobium sp. ORNL1 2711231 Bacteria Bacteria 89.8 1.11e-13   NTclustered gi|1815841271|gb|CP049143.1| 2711231 g54633 i0 88 0.433526011560694 75 9 43 0 2 76 1908904 1908978 Roseimicrobium sp. ORNL1 chromosome, complete genome blastn 75 89.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Roseimicrobium Roseimicrobium sp. ORNL1
14475447 14475447 PRJNA473824_P_NODE_36912_length_199_cov_0.882716_g36274_i0 PRJNA473824 36912 199 0.882716 1.75660484 Luteolibacter sp. 1962973 Bacteria Bacteria 224 3.4599999999999996e-54   NTclustered gi|2836248208|gb|CP121322.1| 1962973 g36274 i0 86.935 67.0552763819096 199 26 100 0 1 199 1009915 1010113 MAG: Luteolibacter sp. isolate NCC532_bact_1514 chromosome, complete genome blastn 13344 224 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp.
18298455 18298455 PRJNA473824_P_NODE_37775_length_197_cov_1.012500_g37137_i0 PRJNA473824 37775 197 1.0125 1.994625 Luteolibacter sp. AS25 3135776 Bacteria Bacteria 270 4.33e-68   NTclustered gi|2889346039|gb|CP151837.1| 3135776 g37137 i0 91.371 9.05583756345178 197 17 100 0 1 197 454776 454580 Luteolibacter sp. AS25 chromosome, complete genome blastn 1784 270 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. AS25
19571822 19571822 PRJNA473824_P_NODE_100496_length_173_cov_2.764706_g99858_i0 PRJNA473824 100496 173 2.764706 4.78294138 Congregicoccus parvus 3081749 Bacteria Bacteria 56.5 0.001   NTclustered gi|2599616993|dbj|AP028972.1| 3081749 g99858 i0 90.698 0.248554913294798 43 2 24 2 1 42 1725976 1726017 Opitutales bacterium ASA1 DNA, complete genome blastn 43 56.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Alterococcaceae Congregicoccus Congregicoccus parvus
22122741 22122741 PRJNA473824_P_NODE_125798_length_163_cov_4.460317_g125160_i0 PRJNA473824 125798 163 4.460317 7.27031671 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 76.8 8.06e-10   NTclustered gi|2621704341|emb|OY760937.1| 2499141 g125160 i0 95.745 0.50920245398773 47 2 29 0 11 57 4325939 4325985 MAG: Verrucomicrobiae bacterium isolate 066a7682-a1ac-48de-8761-1470dc9e5c3e genome assembly, chromosome: 1 blastn 83 76.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;