RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA473824" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA473824 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
446603 446603 PRJNA473824_P_NODE_161321_length_151_cov_1.026316_g160683_i0 PRJNA473824 161321 151 1.026316 1.54973716 Gigantopelta aegis 1735272 Mollusca Mollusca 52.8 0.012   NTclustered gi|2034333061|ref|XM_041508712.1| 1735272 g160683 i0 100 0.370860927152318 28 0 19 0 47 74 1581 1554 PREDICTED: Gigantopelta aegis MAM and LDL-receptor class A domain-containing protein 1-like (LOC121380006), transcript variant X1, mRNA blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Neomphalida Peltospiridae Gigantopelta Gigantopelta aegis
4924314 4924314 PRJNA473824_P_NODE_128424_length_160_cov_1.341463_g127786_i0 PRJNA473824 128424 160 1.341463 2.1463408 Stylommatophora 6527 Mollusca Mollusca 291 2.5799999999999998e-74   NTclustered gi|1904654945|gb|MT998615.1| 234951 g127786 i0 99.375 100 160 1 100 0 1 160 821 662 Amphidromus atricallosus voucher AmphidromusatricallosusQ612 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 16000 291 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Amphidromus Amphidromus atricallosus
15749838 15749838 PRJNA473824_P_NODE_66473_length_173_cov_4.176471_g65835_i0 PRJNA473824 66473 173 4.176471 7.22529483 Argopecten irradians 31199 Mollusca Mollusca 52.8 0.015   NTclustered gi|2835321703|ref|XM_069252911.1| 31199 g65835 i0 100 0.323699421965318 28 0 16 0 98 125 4714 4741 PREDICTED: Argopecten irradians uncharacterized protein (LOC138311649), transcript variant X2, mRNA blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Argopecten Argopecten irradians
22122805 22122805 PRJNA473824_P_NODE_132998_length_154_cov_3.743590_g132360_i0 PRJNA473824 132998 154 3.74359 5.7651286 Patella vulgata 6465 Mollusca Mollusca 56.5 0.001   NTclustered gi|2506325720|ref|XR_007679428.2| 6465 g132360 i0 100 0.766233766233766 30 0 19 0 37 66 1852 1823 PREDICTED: Patella vulgata nucleolar GTP-binding protein 2 (LOC126818954), transcript variant X2, misc_RNA blastn 118 56.5 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Patellidae Patella Patella vulgata
23399548 23399548 PRJNA473824_P_NODE_87159_length_173_cov_3.161765_g86521_i0 PRJNA473824 87159 173 3.161765 5.46985345 Dreissena polymorpha 45954 Mollusca Mollusca 113 6.5700000000000005e-21   NTclustered gi|2364493150|ref|XM_052360616.1| 45954 g86521 i0 94.595 4.7514450867052 74 3 42 1 100 172 1200 1273 PREDICTED: Dreissena polymorpha uncharacterized LOC127834603 (LOC127834603), transcript variant X3, mRNA blastn 822 113 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Myida Dreissenidae Dreissena Dreissena polymorpha

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;