RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA473824" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA473824 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11924919 11924919 PRJNA473824_P_NODE_128370_length_160_cov_1.658537_g127732_i0 PRJNA473824 128370 160 1.658537 2.6536592 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 230 5.71e-56   NTclustered gi|575456455|gb|CP007128.1| 861299 g127732 i0 92.547 129.1 161 10 100 2 1 160 3042656 3042815 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 20656 230 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
13850089 13850089 PRJNA473824_P_NODE_32931_length_209_cov_1.976744_g32293_i0 PRJNA473824 32931 209 1.976744 4.13139496 Pseudomonadati 3379134 Bacteria Bacteria 231 2.19e-56   NTclustered gi|2874253755|emb|OY969695.1| 412054 g32293 i0 86.603 102.244019138756 209 28 100 0 1 209 161198 161406 MAG: uncultured Gemmatimonadales bacterium isolate MFD04967.bin.1.34 genome assembly, chromosome: 1 blastn 21369 233 0.991416309012876 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
14475738 14475738 PRJNA473824_P_NODE_67172_length_173_cov_4.125000_g66534_i0 PRJNA473824 67172 173 4.125 7.13625 Gemmatimonas groenlandica 2732249 Bacteria Bacteria 52.8 0.015   NTclustered gi|1839994010|gb|CP053085.1| 2732249 g66534 i0 100 0.161849710982659 28 0 16 0 118 145 378248 378275 Gemmatimonas groenlandica strain TET16 chromosome, complete genome blastn 28 52.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas groenlandica
18947598 18947598 PRJNA473824_P_NODE_107615_length_173_cov_2.617647_g106977_i0 PRJNA473824 107615 173 2.617647 4.52852931 Pseudomonadati 3379134 Bacteria Bacteria 89.8 1.11e-13   NTclustered gi|2874253728|emb|OY969570.1| 412054 g106977 i0 91.045 28.3699421965318 67 4 38 2 6 71 4413414 4413349 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 4908 89.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;