RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA473824" and tax_phylum = "Chytridiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA473824 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1720874 1720874 PRJNA473824_P_NODE_10162_length_397_cov_3.711111_g9540_i0 PRJNA473824 10162 397 3.711111 14.73311067 Piromyces sp. 45796 Fungi Fungi 278 5.76e-70   NTclustered gi|1388116266|gb|MH043820.1| 45796 g9540 i0 100 7.75062972292191 150 0 38 0 248 397 1 150 Piromyces sp. strain B5 Glycosyl hydrolase family 43 mRNA, partial cds blastn 3077 278 1 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes Neocallimastigales Neocallimastigaceae Piromyces Piromyces sp.
5550801 5550801 PRJNA473824_P_NODE_66305_length_173_cov_4.191176_g65667_i0 PRJNA473824 66305 173 4.191176 7.25073448 Piromyces sp. 45796 Fungi Fungi 119 1.4100000000000001e-22   NTclustered gi|1388116266|gb|MH043820.1| 45796 g65667 i0 95.89 0.76878612716763 73 3 42 0 4 76 319 247 Piromyces sp. strain B5 Glycosyl hydrolase family 43 mRNA, partial cds blastn 133 119 1 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes Neocallimastigales Neocallimastigaceae Piromyces Piromyces sp.
17024629 17024629 PRJNA473824_P_NODE_92494_length_173_cov_2.970588_g91856_i0 PRJNA473824 92494 173 2.970588 5.13911724 Piromyces sp. 45796 Fungi Fungi 217 4.869999999999999e-52   NTclustered gi|1388116266|gb|MH043820.1| 45796 g91856 i0 87.861 22.9537572254335 173 12 100 1 1 173 211 374 Piromyces sp. strain B5 Glycosyl hydrolase family 43 mRNA, partial cds blastn 3971 217 1 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes Neocallimastigales Neocallimastigaceae Piromyces Piromyces sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;