RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA473824" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA473824 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1720960 1720960 PRJNA473824_P_NODE_114002_length_173_cov_2.352941_g113364_i0 PRJNA473824 114002 173 2.352941 4.07058793 uncultured Dehalococcoidia bacterium 498747 Bacteria Bacteria 52.8 0.015   NTclustered gi|2531949168|emb|OY282456.1| 498747 g113364 i0 100 0.161849710982659 28 0 16 0 37 64 45572 45545 MAG: uncultured Dehalococcoidia bacterium genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       uncultured Dehalococcoidia bacterium
4273504 4273504 PRJNA473824_P_NODE_15984_length_298_cov_1.938697_g15346_i0 PRJNA473824 15984 298 1.938697 5.77731706 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 298 3.22e-76   NTclustered gi|2874254132|emb|OY970217.1| 1672391 g15346 i0 84.899 525.348993288591 298 41 99 4 3 298 3521704 3521999 MAG: uncultured Chloroflexia bacterium isolate MFD05684.bin.1.130 genome assembly, chromosome: 1 blastn 156554 298 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
7474729 7474729 PRJNA473824_P_NODE_93966_length_173_cov_2.882353_g93328_i0 PRJNA473824 93966 173 2.882353 4.98647069 PVC group 1783257 Bacteria Bacteria 62.1 2.41e-5   NTclustered gi|1446038753|dbj|AP018437.1| 913107 g93328 i0 89.796 5.75722543352601 49 3 28 2 126 173 847513 847466 Pelolinea submarina MO-CFX1 DNA, complete genome blastn 996 62.1 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales Anaerolineaceae Pelolinea Pelolinea submarina
13200042 13200042 PRJNA473824_P_NODE_142131_length_151_cov_5.000000_g141493_i0 PRJNA473824 142131 151 5 7.55 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 58.4 2.65e-4   NTclustered gi|2874253860|emb|OY969916.1| 1672391 g141493 i0 97.059 0.225165562913907 34 1 23 0 113 146 6721250 6721217 MAG: uncultured Chloroflexia bacterium isolate MFD01916.bin.3.39 genome assembly, chromosome: 1 blastn 34 58.4 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;