RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA473824" and tax_clade = "Stenosarchaea group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Stenosarchaea group · 5 ✖

bioproject 1

  • PRJNA473824 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10651021 10651021 PRJNA473824_P_NODE_89329_length_173_cov_3.095588_g88691_i0 PRJNA473824 89329 173 3.095588 5.35536724 Halosolutus gelatinilyticus 2931975 Archaea Archaea 52.8 0.015   NTclustered gi|2225350841|gb|CP095491.1| 2931975 g88691 i0 100 0.161849710982659 28 0 16 0 26 53 608769 608742 Halosolutus gelatinilyticus strain SQT-29-1 chromosome, complete genome blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Halosolutus Halosolutus gelatinilyticus
11924761 11924761 PRJNA473824_P_NODE_110450_length_173_cov_2.536765_g109812_i0 PRJNA473824 110450 173 2.536765 4.38860345 Natronomonas halophila 2747817 Archaea Archaea 128 2.35e-25   NTclustered gi|1865516082|gb|CP058334.1| 2747817 g109812 i0 97.333 0.872832369942196 75 2 87 0 2 76 1184121 1184047 Natronomonas halophila strain C90 chromosome, complete genome blastn 151 128 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Natronomonas Natronomonas halophila
15749658 15749658 PRJNA473824_P_NODE_44273_length_184_cov_2.469388_g43635_i0 PRJNA473824 44273 184 2.469388 4.54367392 uncultured Methanoregula sp. 1005933 Archaea Archaea 178 2.48e-40   NTclustered gi|2621785414|emb|OY781872.1| 1005933 g43635 i0 84.409 1.01086956521739 186 23 99 5 2 184 3086411 3086229 MAG: uncultured Methanoregula sp. isolate a338d9b7-13de-4e9d-8f1a-cfe667c23436 genome assembly, chromosome: 1 blastn 186 178 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula uncultured Methanoregula sp.
19572436 19572436 PRJNA473824_P_NODE_19676_length_266_cov_3.960699_g19038_i0 PRJNA473824 19676 266 3.960699 10.53545934 uncultured Methanoregula sp. 1005933 Archaea Archaea 198 2.95e-46   NTclustered gi|2621785414|emb|OY781872.1| 1005933 g19038 i0 88.485 30.8834586466165 165 17 62 2 5 168 3104125 3103962 MAG: uncultured Methanoregula sp. isolate a338d9b7-13de-4e9d-8f1a-cfe667c23436 genome assembly, chromosome: 1 blastn 8215 198 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula uncultured Methanoregula sp.
23399404 23399404 PRJNA473824_P_NODE_60759_length_173_cov_4.757353_g60121_i0 PRJNA473824 60759 173 4.757353 8.23022069 Halorientalis sp. IM1011 1932360 Archaea Archaea 71.3 4.01e-8   NTclustered gi|1142895524|gb|CP019067.1| 1932360 g60121 i0 97.561 1.16763005780347 41 1 24 0 1 41 1718003 1718043 Halorientalis sp. IM1011 chromosome, complete genome blastn 202 71.3 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Halorientalis Halorientalis sp. IM1011

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;