RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA473799" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA473799 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4272585 4272585 PRJNA473799_P_NODE_27964_length_263_cov_0.826316_g27690_i0 PRJNA473799 27964 263 0.826316 2.17321108 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 411 3.439999999999999e-110   NTclustered gi|56757963|gb|AY815390.1| 6182 g27690 i0 94.737 124.038022813688 266 11 100 3 1 263 1310 1575 Schistosoma japonicum SJCHGC01951 protein mRNA, complete cds blastn 32622 412 0.997572815533981 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
5549288 5549288 PRJNA473799_P_NODE_34105_length_251_cov_2.797753_g33831_i0 PRJNA473799 34105 251 2.797753 7.02236003 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 448 2.48e-121   NTclustered gi|60698688|gb|AY915747.1| 6182 g33831 i0 98.805 2.33067729083665 251 3 100 0 1 251 373 123 Schistosoma japonicum SJCHGC09661 protein mRNA, partial cds blastn 585 448 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
6823332 6823332 PRJNA473799_P_NODE_33506_length_253_cov_0.683333_g33232_i0 PRJNA473799 33506 253 0.683333 1.72883249 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 401 1.9799999999999994e-107   NTclustered gi|56757963|gb|AY815390.1| 6182 g33232 i0 95.276 121.217391304348 254 10 100 2 1 253 1821 1569 Schistosoma japonicum SJCHGC01951 protein mRNA, complete cds blastn 30668 401 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
10649731 10649731 PRJNA473799_P_NODE_6729_length_434_cov_2.279778_g6458_i0 PRJNA473799 6729 434 2.279778 9.89423652 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 797 0   NTclustered gi|1124902734|gb|AY812498.2| 6182 g6458 i0 99.77 104.758064516129 435 0 100 1 1 434 1546 1112 Schistosoma japonicum SJCHGC01615 protein mRNA, partial cds blastn 45465 802 0.993765586034913 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;