RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA473799" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA473799 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4923844 4923844 PRJNA473799_P_NODE_27624_length_263_cov_1.621053_g27350_i0 PRJNA473799 27624 263 1.621053 4.26336939 Neochlamydia 112987 Bacteria Bacteria 259 1.32e-64   NTclustered gi|194594624|gb|EU662269.1| 112235 g27350 i0 87.611 129.125475285171 226 24 86 4 1 225 2201 1979 Neochlamydia hartmannellae strain ATCC 50802 23S ribosomal RNA gene, partial sequence blastn 33960 259 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Neochlamydia Neochlamydia hartmannellae
6823340 6823340 PRJNA473799_P_NODE_34026_length_252_cov_1.117318_g33752_i0 PRJNA473799 34026 252 1.117318 2.81564136 Estrella lausannensis 483423 Bacteria Bacteria 178 3.61e-40   NTclustered gi|343183590|gb|JN201889.1| 483423 g33752 i0 86.875 103.111111111111 160 19 63 2 14 172 2281 2439 Estrella lausannensis 23S ribosomal RNA gene, complete sequence blastn 25984 178 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Criblamydiaceae Estrella Estrella lausannensis
7473821 7473821 PRJNA473799_P_NODE_45446_length_245_cov_1.488372_g45172_i0 PRJNA473799 45446 245 1.488372 3.6465114 Parachlamydia 83551 Bacteria Bacteria 375 1.16e-99   NTclustered gi|470491594|ref|NR_077046.1| 83552 g45172 i0 94.309 134.673469387755 246 13 100 1 1 245 784 1029 Parachlamydia acanthamoebae strain UV-7 23S ribosomal RNA gene, complete sequence blastn 32995 375 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia acanthamoebae
24047594 24047594 PRJNA473799_P_NODE_23919_length_270_cov_1.974619_g23645_i0 PRJNA473799 23919 270 1.974619 5.3314713 Parachlamydiaceae 92713 Bacteria Bacteria 370 6.02e-98   NTclustered gi|470491594|ref|NR_077046.1| 83552 g23645 i0 92.045 169.474074074074 264 20 98 1 1 264 919 1181 Parachlamydia acanthamoebae strain UV-7 23S ribosomal RNA gene, complete sequence blastn 45758 372 0.99462365591397806 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia acanthamoebae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;