RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA473799" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA473799 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2371203 2371203 PRJNA473799_P_NODE_36422_length_250_cov_1.033898_g36148_i0 PRJNA473799 36422 250 1.033898 2.584745 Pseudobdellovibrionaceae 213483 Bacteria Bacteria 370 5.499999999999999e-98   NTclustered gi|578016248|gb|CP002190.1| 765869 g36148 i0 94.561 159.4 239 13 96 0 3 241 611222 611460 Bdellovibrio bacteriovorus W, complete genome blastn 39850 370 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
5549103 5549103 PRJNA473799_P_NODE_18285_length_282_cov_1.272727_g18011_i0 PRJNA473799 18285 282 1.272727 3.58909014 Bdellovibrio sp. NC01 2220073 Bacteria Bacteria 71.3 7.18e-8   NTclustered gi|1700686220|gb|CP030034.1| 2220073 g18011 i0 90.566 13.177304964539 53 5 19 0 1 53 287752 287700 Bdellovibrio sp. NC01 chromosome, complete genome blastn 3716 71.3 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. NC01
9373670 9373670 PRJNA473799_P_NODE_49648_length_243_cov_1.147059_g49374_i0 PRJNA473799 49648 243 1.147059 2.78735337 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 353 5.36e-93   NTclustered gi|2258818259|gb|CP060220.1| 2026715 g49374 i0 93.671 205.40329218107 237 14 98 1 1 237 3250687 3250922 MAG: Pseudobdellovibrionaceae bacterium isolate HK-STAS-BDEL-7 chromosome blastn 49913 353 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
11924154 11924154 PRJNA473799_P_NODE_21670_length_275_cov_1.252475_g21396_i0 PRJNA473799 21670 275 1.252475 3.44430625 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 230 1.0899999999999995e-55   NTclustered gi|2556916994|gb|CP129486.1| 3034175 g21396 i0 84.016 0.887272727272727 244 34 88 5 1 242 470044 469804 MAG: Bdellovibrionota bacterium isolate cMAG.10 chromosome, complete genome blastn 244 230 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;