RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA473799" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA473799 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1095787 1095787 PRJNA473799_P_NODE_41821_length_247_cov_1.333333_g41547_i0 PRJNA473799 41821 247 1.333333 3.29333251 Fimbriimonas 1005038 Bacteria Bacteria 257 4.41e-64   NTclustered gi|663071213|gb|CP007139.1| 661478 g41547 i0 85.484 22.4898785425101 248 34 100 2 1 247 28418 28172 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 5555 257 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
2371151 2371151 PRJNA473799_P_NODE_31422_length_256_cov_1.704918_g31148_i0 PRJNA473799 31422 256 1.704918 4.36459008 Fimbriimonas 1005038 Bacteria Bacteria 316 7.47e-82   NTclustered gi|663071213|gb|CP007139.1| 661478 g31148 i0 90.456 145.78515625 241 21 93 1 17 255 28115 27875 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 37321 316 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
2996093 2996093 PRJNA473799_P_NODE_16763_length_285_cov_2.080189_g16489_i0 PRJNA473799 16763 285 2.080189 5.92853865 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 351 2.32e-92   NTclustered gi|2556940000|gb|CP129494.1| 2682144 g16489 i0 89.286 410.933333333333 280 30 98 0 6 285 1059833 1059554 MAG: Fimbriimonadaceae bacterium isolate cMAG.2 chromosome, complete genome blastn 117116 351 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium
20222146 20222146 PRJNA473799_P_NODE_45096_length_245_cov_4.523256_g44822_i0 PRJNA473799 45096 245 4.523256 11.0819772 Armatimonadota 67819 Bacteria Bacteria 318 1.9699999999999998e-82   NTclustered gi|1996217993|dbj|AP021858.1| 2608984 g44822 i0 92.07 614.897959183673 227 16 93 1 19 245 34500 34724 Candidatus Nitrosymbiomonas proteolyticus DNA, complete genome blastn 150650 318 1 Bacteria   Bacillati Armatimonadota       Candidatus Nitrosymbiomonas Candidatus Nitrosymbiomonas proteolyticus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;